ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0115065
Analysis Project Name Prefix Proteiniphilum sp. EBM-41
Analysis Project Name Suffix
Analysis Project Type Metagenome-Assembled Genome
IMG Submission ID 81399
NCBI BioProject ID
NCBI BioProject Accession
NCBI BioSample Accession
Completion Status Complete
IMG Completion Date 2016-03-23
PI John Coates
Description Trimmed reads based on quality (Sickle v 1.33), assembled trimmed reads (Megahit v 1.0.2), mapped reads to contigs to assess quality and coverage (BWA-MEM v 0.7.10), binned contigs and assigned taxonomy (Anvi’o v 1.1.0), assessed bin quality (CheckM v 1.0.1)
Visibility Public
ANALYSIS PROJECT METADATA
GOLD Organism Name Proteiniphilum sp. EBM-41
NCBI Taxonomy ID 294702
Phylum BACTEROIDETES
Domain BACTERIAL
NCBI Superkingdom Bacteria
NCBI Kingdom
Scaffold Count 43
Contig Count 43
Binning Method Anvi'o v 1.1.0 (TNF, GC content, & coverage across multiple samples)
Gene Calling Method (MIGS-32) Prodigal v 2.6.2
Gene Count 2477
Estimated Size 2854529
Sequencing Depth (MIGS-31.1)
Contamination Percentage
Completeness Percentage
Annotation Pipeline IMG Annotation Pipeline v.4.10.0
Added By Israel Figueroa on 2016-03-10
Last Modified By Supratim Mukherjee on 2017-05-02
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 2657245168
Genbank Accession
Assembly Accession
Genbank Release Date
SRA Runs
MAG Publication
ANALYSIS PROJECT COMPOSITION
Study Sludge microbial communities from wastewater anaerobic digester in Oakland, CA, USA - phosphite and CO2 enriched
Source Analysis Project Sludge microbial communities from wastewater anaerobic digester in Oakland, CA, USA - phosphite and CO2 enriched

 

 

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