ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0102824
Analysis Project Name Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.753
Analysis Project Name Suffix
Analysis Project Type Metagenome Analysis
IMG Submission ID 78460
Completion Status Complete
IMG Completion Date 2016-03-22
PI Holly Simon
Analysis Project Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) MEGAHIT v. 1.0.3
Scaffold Count 4007873
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 4096550
Estimated Size 1177229915
Sequencing Depth (MIGS-31.1)
Genbank Anomalous Assembly
Genbank Anomalous Reason
Annotation Pipeline IMG Annotation Pipeline v.4.10.0
Added By JGI automated process on 2015-12-18
Last Modified By JGI automated process on 2021-11-06
ORF Comparison Tools
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300007681
IMG Metagenome bin count 6
IMG Predicted viruses 82
Genbank Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 2
Derived Analysis Projects (DAP) 0
JGI INFORMATION
JGI Data Utilization Status Unrestricted
ITS Analysis Project ID 1091762 (Portal)
ITS Analysis Project Name Columbia river estuary metaG S.753
ITS Analysis Product Name Metagenome Minimal Draft
ITS Version Number 1
Library Names AUSNT
JGI Award DOI 10.46936/10.25585/60000867

 

 

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