Studies
|
45,803 |
|
Biosamples
|
102,662 |
|
Sequencing Projects
|
358,043 |
|
Analysis Projects
|
285,299 |
| Organisms | 388,541 |
| ANALYSIS PROJECT INFORMATION | |||||||
|---|---|---|---|---|---|---|---|
|
GOLD Analysis Project ID
|
Ga0101194 |
||||||
| Analysis Project Name Prefix |
Caldicellulosiruptor bescii MACB_DSM 6725 |
||||||
|
Analysis Project Name Suffix
|
|
||||||
|
Analysis Project Type
|
Genome Analysis (Isolate) |
||||||
|
IMG Submission ID
|
85030 | ||||||
| Completion Status |
Complete |
||||||
|
IMG Completion Date
|
2016-04-20 |
||||||
| PI | Robert Kelly | ||||||
|
Description
|
|
||||||
| Visibility | Public | ||||||
| ANALYSIS PROJECT METADATA | |||||||
|
Assembly Method
(MIGS-30)
|
HGAP v. 2.3.0_p5,protocol version=2.3.0 method=RS_HGAP_Assembly.3,smrtpipe.py v1.87.139483, |
||||||
|
IMG Decontamination
|
Yes |
||||||
|
IMG Decontamination Method
|
PhiX decontamination |
||||||
|
Scaffold Count
|
3 |
||||||
|
Contig Count
|
|
||||||
|
Gene Calling Method
(MIGS-32)
|
|
||||||
| Gene Count |
2905 |
||||||
| Estimated Size |
2960910 |
||||||
|
Sequencing Depth
(MIGS-31.1)
|
205x |
||||||
| Annotation Pipeline |
IMG Annotation Pipeline v.4.10.2 |
||||||
| Added By |
JGI automated process
on 2015-11-16 |
||||||
| Last Modified By |
JGI automated process
on 2019-05-03 |
||||||
| Non-SP-Owner AP |
No |
||||||
| PROJECT EXTERNAL REFERENCES | |||||||
|
IMG Taxon ID
|
2663762791 |
||||||
|
Genbank Accession
|
|
||||||
| Assembly Accession |
GCA_900184165.1 |
||||||
| Genbank Release Date |
2017-06-21 |
||||||
| SRA Runs |
|
||||||
| ANALYSIS PROJECT COMPOSITION | |||||||
| Study |
Genome sequencing of Caldicellulosiruptor bescii uracil auxotroph strains for use in genetic manipulations |
||||||
|
Number of Studies
|
1 |
||||||
|
Number of Projects
|
1 |
||||||
|
Number of Related Analysis Projects
|
0 |
||||||
| JGI INFORMATION | |||||||
|
ITS Analysis Project ID
|
1090897 (Portal) |
||||||
|
ITS Analysis Project Name
|
Caldicellulosiruptor bescii MACB_DSMZ |
||||||
|
ITS Analysis Product Name
|
Microbial Improved Draft Isolate Genome |
||||||
| ITS Version Number |
1 |
||||||
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