Studies
|
40,453 |
|
Biosamples
|
82,328 |
|
Sequencing Projects
|
316,051 |
|
Analysis Projects
|
250,320 |
| Organisms | 370,304 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0099800 |
| Analysis Project Name Prefix |
Marine eukaryotic communities from CALCOFI LINE 67, Pacific Ocean - CN11_C50_N6_SortRC_1 |
|
Analysis Project Name Suffix
|
|
|
Analysis Project Type
|
Metagenome - Cell Enrichment |
|
IMG Submission ID
|
89868 |
| Completion Status |
Complete |
|
IMG Completion Date
|
2016-06-22 |
| PI | Alexandra Worden |
|
Description
|
|
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
spades v. 3.6.2 |
|
IMG Decontamination
|
|
|
IMG Decontamination Method
|
|
| GenePRIMP |
|
|
Scaffold Count
|
868 |
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
10122 |
| Estimated Size |
10267719 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Annotation Pipeline |
IMG Annotation Pipeline v.4.11.3 |
| Added By |
JGI automated process
on 2015-10-29 |
| Last Modified By |
JGI automated process
on 2018-08-23 |
| Non-SP-Owner AP |
No |
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
3300009742 |
| IMG RNA-Seq ID |
|
|
Genbank
|
|
| Assembly Accession |
|
| Genbank Release Date |
|
| SRA Runs |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Marine eukaryotic communities from CALCOFI LINE 67, Pacific Ocean, that are photosynthetic |
|
Number of Studies
|
1 |
|
Number of Biosamples
|
1 |
|
Number of Projects
|
1 |
|
Number of Related Analysis Projects
|
0 |
|
Derived Analysis Projects
|
0 |
| JGI INFORMATION | |
|
ITS Analysis Project ID
|
1086510 (Portal) |
|
ITS Analysis Project Name
|
Uncultured metagenome CN11_C50_N6_SortRC_1 |
|
ITS Analysis Product Name
|
Amplified, Random, Cell Enrichment |
| ITS NCBI Taxon ID |
|
| ITS Version Number |
1 |
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