ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0066288
Analysis Project Name Prefix Epsilonproteobacteria bacterium SCGC AD-311-F16
Analysis Project Name Suffix
Analysis Project Type Single Cell Analysis (screened)
IMG Submission ID 61662
Completion Status Complete
IMG Completion Date 2015-06-01
PI Steven Hallam
Description
Contamination Screening Method
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) spades v. 3.0.0
IMG Decontamination Yes
IMG Decontamination Method Manual
GenePRIMP
Scaffold Count 45
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 1069
Estimated Size 1147743
Sequencing Depth (MIGS-31.1)
Annotation Pipeline
Added By JGI automated process on 2015-02-24
Last Modified By JGI automated process on 2019-05-03
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 2617270701
IMG RNA-Seq ID
Genbank Accession
Assembly Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Single-cell microbial genomes from expanding oxygen minimum zones (OMZs) of the northeastern subarctic Pacific Ocean (NESAP)
Number of Studies 1
Number of Biosamples 0
Number of Projects 1
Number of Related Analysis Projects 2
Derived Analysis Projects 0
JGI INFORMATION
ITS Analysis Project ID 1062217 (Portal)
ITS Analysis Project Name Epsilonproteobacteria bacterium SCGC AD-311-F16 Screened Assembly
ITS Analysis Product Name Microbial Minimal Draft Single Cell Screened Genome
ITS NCBI Taxon ID
ITS Version Number 1

 

 

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