ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0062974
Analysis Project Name Prefix Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow Y-2 switchgrass
Analysis Project Name Suffix - mapped to GOLD AP Ga0061019 (Cow X and Y Switchgrass)
Analysis Project Type Metatranscriptome mapping (other)
IMG Submission ID
Completion Status Incomplete
Completion Date
PI Matthias Hess
Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30)
IMG Decontamination
IMG Decontamination Method
GenePRIMP
Scaffold Count
Contig Count
Gene Calling Method (MIGS-32)
Gene Count
Estimated Size
Sequencing Depth (MIGS-31.1)
Annotation Pipeline
Added By JGI automated process on 2014-12-05
Last Modified By JGI automated process on 2019-05-06
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID
IMG RNA-Seq ID
Genbank
Assembly Accession
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis
Number of Projects 1
Reference Analysis Project Coassembly of Cow X and Y Switchgrass
JGI INFORMATION
ITS Analysis Project ID 1057074 (Portal)
ITS Analysis Project Name Cow rumen Metatranscriptome - Cow Y-2 switchgrass Mapping to Cow X and Y Switchgrass
ITS Analysis Product Name Metagenome Metatranscriptome Expression - Other
ITS NCBI Taxon ID
ITS Version Number 1

 

 

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