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Study

Study Name: Seawater microbial communities from Ofunato Bay, Japan

Projects

Biosamples

Organisms

Biosamples: 3 Seq. Projects: 3
STUDY INFORMATION
GOLD Study ID Gs0153912
Study Name Seawater microbial communities from Ofunato Bay, Japan
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id DRP004618  (Link to NCBI )
Study Title Metagenomic sequences of the Ofunato Bay 2015
Study Abstract The Ofunato Bay in Iwate Prefecture, Japan, is a deep coastal bay located at the center of the Sanriku Rias coast and considered an economically and environmentally important asset. Here we present the first whole genome sequencing (WGS) study on the microbial communities of the Bay where surface water samples were collected in 2015 from three stations along its length to cover the entire bay. We sequenced 0.2-??m filter fraction, targeting the free-living fraction only, among the sequentially size-fractionated samples of 20.0-, 5.0-, 0.8- and 0.2-??m filters,. As expected, Proteobacteria (Alpha, Beta and Gamma) were the most abundant phyla in the Ofunato Bay followed by Bacteroidetes, Firmicutes, Actinobacteria, Cyanobacteria and Tenericutes. We detected a wide range of heterotrophic bacteria, Archaea and eukaryotic algae. The majority of these bacteria are considered significant in oceans and marine ecology.
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2021-03-20
Last Modified By
PI
Description Seawater microbial communities from Ofunato Bay, Japan
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Environmental
Ecosystem Category Aquatic
Ecosystem Type Marine
Ecosystem Subtype Coastal
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 3
Number of Organisms 0
Number of Seq Projects 3
Number of Analysis Projects 0
Number of Related Studies 0

 

 

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