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Study

Study Name: Mollusc gills microbial communities from various hydrothermal vent in Atlantic Ocean

Projects

Biosamples

Organisms

Biosamples: 20 Seq. Projects: 20
STUDY INFORMATION
GOLD Study ID Gs0149372
Study Name Mollusc gills microbial communities from various hydrothermal vent in Atlantic Ocean
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id ERP115508  (Link to NCBI )
Study Title Metagenomics of symbiotic bathmodiolin mussels
Study Abstract Microbial strain variability is virtually universal, from deep-sea environments to the human gut, but the complexity of most natural microbial communities poses an immense challenge for understanding its functional ecological and evolutionary consequences. Bathymodiolus mussels are ideal for understanding strain variability because they naturally host only a few species of symbiotic bacteria. We sequenced metagenomes from 19 Bathymodiolus individuals from different hydrothermal vents in the Atlantic and developed a metagenomics workflow to tease apart co-existing symbiont strains. Metatranscriptomic data were produced to test whether strain-specific genes were expressed.
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2020-07-30
Last Modified By
PI
Description The goal of this study is to identify symbiotic bacteria associated with different species of Bathymodiolus mussels
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Host-associated
Ecosystem Category Mollusca
Ecosystem Type Respiratory system
Ecosystem Subtype Gills
Specific Ecosystem Intracellular
STUDY COMPOSITION
Number of Biosamples 20
Number of Organisms 0
Number of Seq Projects 20
Number of Analysis Projects 19
Number of Related Studies 0

 

 

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