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Study

Study Name: Leaf-associated microbial communities from spinach spiked with STEC, FDA, Maryland, United States

Projects

Biosamples

Organisms

Biosamples: 12 Seq. Projects: 12
STUDY INFORMATION
GOLD Study ID Gs0145275
Study Name Leaf-associated microbial communities from spinach spiked with STEC, FDA, Maryland, United States
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP083779  (Link to NCBI )
Study Title food contamination metagenome Metagenome
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2020-01-24
Last Modified By Jagadish Sundaramurthi on 2020-06-02
PI
Description The goal of this study is to implement a shotgun metagenomics approach for detection and strain-level identification of Shiga toxin-producing Escherichia coli (STEC) by spiking spinach with a variety of genomically disparate STEC strains at a low contamination level
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Host-associated
Ecosystem Category Plants
Ecosystem Type Phyllosphere
Ecosystem Subtype Leaf
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 12
Number of Organisms 0
Number of Seq Projects 12
Number of Analysis Projects 12
Number of Related Studies 0

 

 

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