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Study

Study Name: Anaerobic biogas microbial community from Germany

Projects

Biosamples

Organisms

Biosamples: 3 Seq. Projects: 3
STUDY INFORMATION
GOLD Study ID Gs0145080
Study Name Anaerobic biogas microbial community from Germany
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id ERP109193  (Link to NCBI )
Study Title Enhanced annotation of microbiomes and their genetic repertoires implicated in anaerobic digestions for the generation of biogas
Study Abstract A Biogas Metagenomics Hybrid Assembly (BioMETHA) database,specific for the microbiome of biogas plants, was generated using a dedicatedassembly strategy for the metagenomic datasets. Long reads from nanoporesequencing (MinION) were combined with short, more accurate secondgeneration sequencing reads (Illumina HiSeq). Binning following assembly resulted in 231 genomic bins with an average completeness of 47%. Functional annotation identified roughly 207k genes, specific for biogas plant microbiomes. BioMETHA allows mapping of up to 73% of DNA samples derived from various biogas plants.
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2020-01-02
Last Modified By
PI
Description Anaerobic biogas microbial community from Germany
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Engineered
Ecosystem Category Bioreactor
Ecosystem Type Anaerobic
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 3
Number of Organisms 0
Number of Seq Projects 3
Number of Analysis Projects 3
Number of Related Studies 0

 

 

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