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Study

Study Name: Apocyclops royi ERS2756829 genome sequencing

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Biosamples: 0 Seq. Projects: 1
STUDY INFORMATION
GOLD Study ID Gs0144312
Study Name Apocyclops royi ERS2756829 genome sequencing
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id ERP111012  (Link to NCBI )
Study Title The genome and transcriptome of the cyclopoid copepod Apocyclops royi. The mRNA transcriptome is from a culture of Apocyclops royi fed either Dunaliella tertiolecta or Isochrysis galbana. The PCRfree WGS genome assembly was scaffolded with the mRNA transcriptome.
Study Abstract We here present the first genome and transcriptome for the cyclopoid copepod Apocyclops royi. We have produced an mRNA transcriptome with cultured animals fed either Dunaliella tertiolecta or Isochrysis galbana. The transcriptome data is assembled using Trinity2.5.1. Further, we have produced a PCRfree WGS genome assembly using SPAdes for assembly. The transcriptome was subsequently used to scaffold the genome assembly using L_RNA_Scaffolder.
  
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Legacy GOLD ID
Added By JGI automated process on 2019-08-15
Last Modified By JGI automated process on 2019-09-06
PI
Description
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Study Information Visibility Public
Metagenomic Study No
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem
Ecosystem Category
Ecosystem Type
Ecosystem Subtype
Specific Ecosystem
STUDY COMPOSITION
Number of Biosamples 0
Number of Organisms 1
Number of Seq Projects 1
Number of Analysis Projects 0
Number of Related Studies 0

 

 

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