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Study

Study Name: Validation of the transfer of sugar catabolism model from Aspergillus niger to other fungi using an orthology-based approach

Projects

Biosamples

Organisms

Biosamples: 0 Seq. Projects: 180
STUDY INFORMATION
GOLD Study ID Gs0142511
Study Name Validation of the transfer of sugar catabolism model from Aspergillus niger to other fungi using an orthology-based approach
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP249233  (Link to NCBI )
Study Title Phanerochaete chrysosporium PR-78 Gene Expression Profiling - PcG3 transcriptome
Study Abstract
  
SRA Study Id SRP249234  (Link to NCBI )
Study Title Phanerochaete chrysosporium PR-78 Gene Expression Profiling - PcG1 transcriptome
Study Abstract
  
SRA Study Id SRP249235  (Link to NCBI )
Study Title Phanerochaete chrysosporium PR-78 Gene Expression Profiling - PcI2 transcriptome
Study Abstract
  
SRA Study Id SRP249236  (Link to NCBI )
Study Title Phanerochaete chrysosporium PR-78 Gene Expression Profiling - PcH3 transcriptome
Study Abstract
  
SRA Study Id SRP249230  (Link to NCBI )
Study Title Phanerochaete chrysosporium PR-78 Gene Expression Profiling - PcF2 transcriptome
Study Abstract
  
SRA Study Id SRP249231  (Link to NCBI )
Study Title Phanerochaete chrysosporium PR-78 Gene Expression Profiling - PcE3 transcriptome
Study Abstract
  
SRA Study Id SRP249232  (Link to NCBI )
Study Title Phanerochaete chrysosporium PR-78 Gene Expression Profiling - PcG2 transcriptome
Study Abstract
  
SRA Study Id SRP246849  (Link to NCBI )
Study Title Penicillium subrubescens CBS 132785 Gene Expression Profiling - PsI3 transcriptome
Study Abstract
  
SRA Study Id SRP246848  (Link to NCBI )
Study Title Penicillium subrubescens CBS 132785 Gene Expression Profiling - PsA1 transcriptome
Study Abstract
  
SRA Study Id SRP246847  (Link to NCBI )
Study Title Penicillium subrubescens CBS 132785 Gene Expression Profiling - PsA2 transcriptome
Study Abstract
  
SRA Study Id SRP246842  (Link to NCBI )
Study Title Penicillium subrubescens CBS 132785 Gene Expression Profiling - PsC1 transcriptome
Study Abstract
  
SRA Study Id SRP246841  (Link to NCBI )
Study Title Penicillium subrubescens CBS 132785 Gene Expression Profiling - PsB3 transcriptome
Study Abstract
  
SRA Study Id SRP246840  (Link to NCBI )
Study Title Penicillium subrubescens CBS 132785 Gene Expression Profiling - PsD1 transcriptome
Study Abstract
  
SRA Study Id SRP249237  (Link to NCBI )
Study Title Phanerochaete chrysosporium PR-78 Gene Expression Profiling - PcI1 transcriptome
Study Abstract
  
SRA Study Id SRP246846  (Link to NCBI )
Study Title Penicillium subrubescens CBS 132785 Gene Expression Profiling - PsA3 transcriptome
Study Abstract
  
SRA Study Id SRP246845  (Link to NCBI )
Study Title Penicillium subrubescens CBS 132785 Gene Expression Profiling - PsB1 transcriptome
Study Abstract
  
SRA Study Id SRP249238  (Link to NCBI )
Study Title Phanerochaete chrysosporium PR-78 Gene Expression Profiling - PcH2 transcriptome
Study Abstract
  
SRA Study Id SRP249239  (Link to NCBI )
Study Title Phanerochaete chrysosporium PR-78 Gene Expression Profiling - PcH1 transcriptome
Study Abstract
  
SRA Study Id SRP246844  (Link to NCBI )
Study Title Penicillium subrubescens CBS 132785 Gene Expression Profiling - PsB2 transcriptome
Study Abstract
  
SRA Study Id SRP246843  (Link to NCBI )
Study Title Penicillium subrubescens CBS 132785 Gene Expression Profiling - PsC2 transcriptome
Study Abstract
  
SRA Study Id SRP249240  (Link to NCBI )
Study Title Phanerochaete chrysosporium PR-78 Gene Expression Profiling - PcI3 transcriptome
Study Abstract
  
SRA Study Id SRP249214  (Link to NCBI )
Study Title Phanerochaete chrysosporium PR-78 Gene Expression Profiling - PcA3 transcriptome
Study Abstract
  
SRA Study Id SRP246828  (Link to NCBI )
Study Title Penicillium subrubescens CBS 132785 Gene Expression Profiling - PsG1 transcriptome
Study Abstract
  
SRA Study Id SRP246827  (Link to NCBI )
Study Title Penicillium subrubescens CBS 132785 Gene Expression Profiling - PsI2 transcriptome
Study Abstract
  
SRA Study Id SRP246826  (Link to NCBI )
Study Title Penicillium subrubescens CBS 132785 Gene Expression Profiling - PsG2 transcriptome
Study Abstract
  
SRA Study Id SRP246825  (Link to NCBI )
Study Title Penicillium subrubescens CBS 132785 Gene Expression Profiling - PsG3 transcriptome
Study Abstract
  
SRA Study Id SRP246829  (Link to NCBI )
Study Title Penicillium subrubescens CBS 132785 Gene Expression Profiling - PsI1 transcriptome
Study Abstract
  
SRA Study Id SRP249219  (Link to NCBI )
Study Title Phanerochaete chrysosporium PR-78 Gene Expression Profiling - PcB1 transcriptome
Study Abstract
  
SRA Study Id SRP249215  (Link to NCBI )
Study Title Phanerochaete chrysosporium PR-78 Gene Expression Profiling - PcA2 transcriptome
Study Abstract
  
SRA Study Id SRP246824  (Link to NCBI )
Study Title Penicillium subrubescens CBS 132785 Gene Expression Profiling - PsH1 transcriptome
Study Abstract
  
SRA Study Id SRP249216  (Link to NCBI )
Study Title Phanerochaete chrysosporium PR-78 Gene Expression Profiling - PcA1 transcriptome
Study Abstract
  
SRA Study Id SRP246823  (Link to NCBI )
Study Title Penicillium subrubescens CBS 132785 Gene Expression Profiling - PsH2 transcriptome
Study Abstract
  
SRA Study Id SRP249217  (Link to NCBI )
Study Title Phanerochaete chrysosporium PR-78 Gene Expression Profiling - PcB3 transcriptome
Study Abstract
  
SRA Study Id SRP249218  (Link to NCBI )
Study Title Phanerochaete chrysosporium PR-78 Gene Expression Profiling - PcB2 transcriptome
Study Abstract
  
SRA Study Id SRP249222  (Link to NCBI )
Study Title Phanerochaete chrysosporium PR-78 Gene Expression Profiling - PcD2 transcriptome
Study Abstract
  
SRA Study Id SRP249223  (Link to NCBI )
Study Title Phanerochaete chrysosporium PR-78 Gene Expression Profiling - PcC1 transcriptome
Study Abstract
  
SRA Study Id SRP249224  (Link to NCBI )
Study Title Phanerochaete chrysosporium PR-78 Gene Expression Profiling - PcC2 transcriptome
Study Abstract
  
SRA Study Id SRP249225  (Link to NCBI )
Study Title Phanerochaete chrysosporium PR-78 Gene Expression Profiling - PcE1 transcriptome
Study Abstract
  
SRA Study Id SRP249220  (Link to NCBI )
Study Title Phanerochaete chrysosporium PR-78 Gene Expression Profiling - PcD1 transcriptome
Study Abstract
  
SRA Study Id SRP249221  (Link to NCBI )
Study Title Phanerochaete chrysosporium PR-78 Gene Expression Profiling - PcC3 transcriptome
Study Abstract
  
SRA Study Id SRP246839  (Link to NCBI )
Study Title Penicillium subrubescens CBS 132785 Gene Expression Profiling - PsF3 transcriptome
Study Abstract
  
SRA Study Id SRP246838  (Link to NCBI )
Study Title Penicillium subrubescens CBS 132785 Gene Expression Profiling - PsC3 transcriptome
Study Abstract
  
SRA Study Id SRP246837  (Link to NCBI )
Study Title Penicillium subrubescens CBS 132785 Gene Expression Profiling - PsD2 transcriptome
Study Abstract
  
SRA Study Id SRP246836  (Link to NCBI )
Study Title Penicillium subrubescens CBS 132785 Gene Expression Profiling - PsF1 transcriptome
Study Abstract
  
SRA Study Id SRP246831  (Link to NCBI )
Study Title Penicillium subrubescens CBS 132785 Gene Expression Profiling - PsE2 transcriptome
Study Abstract
  
SRA Study Id SRP246830  (Link to NCBI )
Study Title Penicillium subrubescens CBS 132785 Gene Expression Profiling - PsH3 transcriptome
Study Abstract
  
SRA Study Id SRP249226  (Link to NCBI )
Study Title Phanerochaete chrysosporium PR-78 Gene Expression Profiling - PcD3 transcriptome
Study Abstract
  
SRA Study Id SRP246835  (Link to NCBI )
Study Title Penicillium subrubescens CBS 132785 Gene Expression Profiling - PsF2 transcriptome
Study Abstract
  
SRA Study Id SRP246834  (Link to NCBI )
Study Title Penicillium subrubescens CBS 132785 Gene Expression Profiling - PsD3 transcriptome
Study Abstract
  
SRA Study Id SRP249227  (Link to NCBI )
Study Title Phanerochaete chrysosporium PR-78 Gene Expression Profiling - PcE2 transcriptome
Study Abstract
  
SRA Study Id SRP249228  (Link to NCBI )
Study Title Phanerochaete chrysosporium PR-78 Gene Expression Profiling - PcF3 transcriptome
Study Abstract
  
SRA Study Id SRP246833  (Link to NCBI )
Study Title Penicillium subrubescens CBS 132785 Gene Expression Profiling - PsE1 transcriptome
Study Abstract
  
SRA Study Id SRP249229  (Link to NCBI )
Study Title Phanerochaete chrysosporium PR-78 Gene Expression Profiling - PcF1 transcriptome
Study Abstract
  
SRA Study Id SRP246832  (Link to NCBI )
Study Title Penicillium subrubescens CBS 132785 Gene Expression Profiling - PsE3 transcriptome
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2019-07-05
Last Modified By JGI automated process on 2019-09-06
PI Ronald de Vries
Description Using the high quality manually curated genome sequence of Aspergillus niger NRRL3 and a large transcriptomic dataset on individual monomeric sugars, the authors have constructed a model for sugar catabolism. This model has the potential of being a reference for other fungi, but to which extent the knowledge can easily be transferred is not known. In this study, the authors aim to test the potential and limits of transferring this model to other fungi using an orthology-based approach combined with omics-analysis on relevant carbon sources to compare the response in different fungi.
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study No
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem
Ecosystem Category
Ecosystem Type
Ecosystem Subtype
Specific Ecosystem
STUDY COMPOSITION
Number of Biosamples 0
Number of Organisms 10
Number of Seq Projects 180
Number of Analysis Projects 0
Number of Related Studies 0

 

 

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