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Study

Study Name: Candidatus Brocadia sinica JPN1

Projects

Biosamples

Organisms

Biosamples: 0 Seq. Projects: 1
STUDY INFORMATION
GOLD Study ID Gs0114732
Study Name Candidatus Brocadia sinica JPN1
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
Legacy ER Study ID
Legacy GOLD ID
Added By Nikos Kyrpides on 2015-05-27
Last Modified By Michelle Isbandi on 2015-06-05
PI Satoshi Okabe
Description This project was performed to retrieve the genome sequence of an anammox bacterium Candidatus 'Brocadia sinica'. Ca. 'B. sinica' is affiliated into the domain bacteria, the phlum Planctomycetes, order Brocadiales and the genus Candiatus 'Brocadia'. Importantly, all the anammox bacteria were classified into the order Brocadiales while no pure isolate is available (5 June 2012). In the present study, the authors attempted to determine the whole genome sequence of the anammox bacterium, Ca 'B. sinica' by metagenomic approach. Total genomic DNA was extracted from the highly enriched biomass of Ca. 'B. sinica' (>94% in total biomass) and subjected to 454 pyrosequencing with GS FLX titanium. The 454 pyrosequencing was performed with the fragment and 3kb-pair-end sequence techniques and the sequence reads were assembled with GS de novo assembler. The gaps remaining on the scaffolds were closed with the standard primer walking and sanger sequencing techniques
Relevance Evolution
Tree of Life
Study Information Link
Study Information Visibility Public
Metagenomic Study No
Publication
ECOSYSTEM CLASSIFICATION
Ecosystem
Ecosystem Category
Ecosystem Type
Ecosystem Subtype
Specific Ecosystem
STUDY COMPOSITION
Number of Biosamples 0
Number of Organisms 1
Number of Seq Projects 1
Number of Analysis Projects 1
Number of Related Studies 0

 

 

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