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Study

Study Name: Subsurface microbial communities from deep shales in Ohio and West Virginia, USA

Projects

Biosamples

Organisms

Biosamples: 96 Seq. Projects: 134
STUDY INFORMATION
GOLD Study ID Gs0118431
Study Name Subsurface microbial communities from deep shales in Ohio and West Virginia, USA
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP140131
Study Title Subsurface microbial communities from deep shales in Texas, USA - hydraulic fracturing test 6_PW_210 metagenome
Study Abstract
  
SRA Study Id SRP140130
Study Title Subsurface microbial communities from deep shales in Texas, USA - hydraulic fracturing test 6_PW_90 metagenome
Study Abstract
  
SRA Study Id SRP140135
Study Title Subsurface microbial communities from deep shales in Ohio, USA - hydraulic fracturing test GB_TF_B metagenome
Study Abstract
  
SRA Study Id SRP112781
Study Title Marinobacter persicus UTICA-S1B9 Genome sequencing
Study Abstract
  
SRA Study Id SRP140134
Study Title Subsurface microbial communities from deep shales in Ohio, USA - hydraulic fracturing test GB_TF_A metagenome
Study Abstract
  
SRA Study Id SRP140133
Study Title Subsurface microbial communities from deep shales in Texas, USA - hydraulic fracturing test 4_PW_90 metagenome
Study Abstract
  
SRA Study Id SRP137883
Study Title Methanohalophilus euhalobius WG1_MB genome sequencing
Study Abstract
  
SRA Study Id SRP140132
Study Title Subsurface microbial communities from deep shales in Ohio, USA - hydraulic fracturing test GB_TM_B metagenome
Study Abstract
  
SRA Study Id SRP153298
Study Title Metatranscriptome of mouse feces microbial communities from Columbus University, Ohio, United States - Sal1
Study Abstract
  
SRA Study Id SRP178951
Study Title Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC metagenome
Study Abstract
  
SRA Study Id SRP098232
Study Title Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S-1-Day17
Study Abstract
  
SRA Study Id SRP184150
Study Title Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25 metagenome
Study Abstract
  
SRA Study Id SRP112789
Study Title Arcobacter marinus UTICA-S4D1 Genome sequencing
Study Abstract
  
SRA Study Id SRP143410
Study Title Subsurface sediment microbial communities from Mancos shale, Colorado, United States - Mancos A1 metagenome
Study Abstract
  
SRA Study Id SRP144305
Study Title Halanaerobium saccharolyticum WC1 genome sequencing
Study Abstract
  
SRA Study Id SRP155224
Study Title Subsurface microbial communities from Mancos shale, Colorado, United States - Mancos A_10_July_PB metagenome
Study Abstract
  
SRA Study Id SRP153287
Study Title Metatranscriptome of mouse feces microbial communities from Columbus University, Ohio, United States - Sal2
Study Abstract
  
SRA Study Id SRP155225
Study Title Subsurface microbial communities from Mancos shale, Colorado, United States - Mancos A_50_July_PB metagenome
Study Abstract
  
SRA Study Id SRP098540
Study Title Methanohalophilus portucalensis FDF-1 genome sequencing
Study Abstract
  
SRA Study Id SRP148186
Study Title Halanaerobium sp. DL-01 Genome sequencing
Study Abstract
  
SRA Study Id SRP148185
Study Title Halanaerobium sp. ST460_2HS_T2 Genome sequencing
Study Abstract
  
SRA Study Id SRP148184
Study Title Halanaerobium sp. MA284_MarDTE_T2 Genome sequencing
Study Abstract
  
SRA Study Id SRP148183
Study Title Halanaerobium saccharolyticum MA284_T2 genome sequencing
Study Abstract
  
SRA Study Id SRP144313
Study Title Halanaerobium saccharolyticum MSL9.2 genome sequencing
Study Abstract
  
SRA Study Id SRP143421
Study Title Subsurface sediment microbial communities from Mancos shale, Colorado, United States - Mancos C3 metagenome
Study Abstract
  
SRA Study Id SRP111591
Study Title Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT
Study Abstract
  
SRA Study Id SRP143420
Study Title Subsurface sediment microbial communities from Mancos shale, Colorado, United States - Mancos B2 metagenome
Study Abstract
  
SRA Study Id SRP157791
Study Title Subsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-FT3-sol metagenome
Study Abstract
  
SRA Study Id SRP143429
Study Title Halanaerobium congolense WG5_pb genome sequencing
Study Abstract
  
SRA Study Id SRP157790
Study Title Subsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E metagenome
Study Abstract
  
SRA Study Id SRP143425
Study Title Subsurface sediment microbial communities from Mancos shale, Colorado, United States - Mancos D4 metagenome
Study Abstract
  
SRA Study Id SRP143428
Study Title Halanaerobium congolense DSM 11287 genome sequencing
Study Abstract
  
SRA Study Id SRP153796
Study Title Fracking water microbial communities from deep shales in Oklahoma, United States - hydraulically fractured wells DE_CT_test metagenome
Study Abstract
  
SRA Study Id SRP157797
Study Title Saline wetland microbial communities from Lincoln, Nebraska, United States - Carb-i39 metagenome
Study Abstract
  
SRA Study Id SRP111595
Study Title Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S-1-Day59
Study Abstract
  
SRA Study Id SRP111597
Study Title Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S-1-Day87
Study Abstract
  
SRA Study Id SRP111596
Study Title Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S-1-Day122
Study Abstract
  
SRA Study Id SRP148275
Study Title Garciella nitratireducens GHB3 genome sequencing
Study Abstract
  
SRA Study Id SRP111598
Study Title Subsurface microbial communities from deep shales in West Virginia, USA - MSEEL M_DM5 metagenome
Study Abstract
  
SRA Study Id SRP143433
Study Title Halanaerobium saccharolyticum MSL 7 genome sequencing
Study Abstract
  
SRA Study Id SRP144324
Study Title Salmonella typhimurium ASD3-69 genome sequencing
Study Abstract
  
SRA Study Id SRP144323
Study Title Salmonella typhimurium 14028 genome sequencing
Study Abstract
  
SRA Study Id SRP143432
Study Title Halanaerobium saccharolyticum MSL 19.2 genome sequencing
Study Abstract
  
SRA Study Id SRP144326
Study Title Escherichia coli 334 genome sequencing
Study Abstract
  
SRA Study Id SRP143434
Study Title Halanaerobium saccharolyticum MSL 17.2 genome sequencing
Study Abstract
  
SRA Study Id SRP112791
Study Title Methylobacter tundripaludum OWC-G53F genome sequencing
Study Abstract
  
SRA Study Id SRP144320
Study Title Halanaerobium congolense MSL28 genome sequencing
Study Abstract
  
SRA Study Id SRP143431
Study Title Eubacterium limosum 8486cho genome sequencing
Study Abstract
  
SRA Study Id SRP144321
Study Title Halanaerobium congolense MSL44.2 genome sequencing
Study Abstract
  
SRA Study Id SRP112790
Study Title Arcobacter marinus MARC-MIP3H16 Genome sequencing
Study Abstract
  
SRA Study Id SRP143436
Study Title Orenia marismortui MSL 6dP genome sequencing
Study Abstract
  
SRA Study Id SRP144327
Study Title Escherichia coli 333 genome sequencing
Study Abstract
  
SRA Study Id SRP140129
Study Title Subsurface microbial communities from deep shales in Ohio, USA - hydraulic fracturing test GB_TM_A metagenome
Study Abstract
  
SRA Study Id SRP113208
Study Title Subsurface microbial communities from deep shales in West Virginia, USA - MSEEL Well Study Marcellus 5H_2016_04_06 metagenome
Study Abstract
  
SRA Study Id SRP113202
Study Title Subsurface microbial communities from deep shales in West Virginia, USA - MSEEL Well Study Marcellus 3H_2016_09_14 metagenome
Study Abstract
  
SRA Study Id SRP112795
Study Title Methanohalophilus euhalobius DSMZ 10369 genome sequencing
Study Abstract
  
SRA Study Id SRP112796
Study Title Methanohalophilus euhalobius WG-1MB genome sequencing
Study Abstract
  
SRA Study Id SRP113203
Study Title Subsurface microbial communities from deep shales in West Virginia, USA - MSEEL Well Study Marcellus 5H_2016_03_03 metagenome
Study Abstract
  
SRA Study Id SRP111583
Study Title Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
Study Abstract
  
SRA Study Id SRP113201
Study Title Subsurface microbial communities from deep shales in West Virginia, USA - MSEEL Well Study Marcellus 5H_2016_07_13 metagenome
Study Abstract
  
SRA Study Id SRP112794
Study Title Methylobacter tundripaludum OWC-DMM genome sequencing
Study Abstract
  
SRA Study Id SRP178946
Study Title Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_2015_12_15 metagenome
Study Abstract
  
SRA Study Id SRP178949
Study Title Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_2017_08_16 metagenome
Study Abstract
  
SRA Study Id SRP111588
Study Title Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S-1-Day23
Study Abstract
  
SRA Study Id SRP148285
Study Title Halomonas sp. A11-A Genome sequencing
Study Abstract
  
SRA Study Id SRP113206
Study Title Subsurface microbial communities from deep shales in West Virginia, USA - MSEEL Well Study Marcellus 5H_2016_09_14 metagenome
Study Abstract
  
SRA Study Id SRP111587
Study Title Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S-1-Day1
Study Abstract
  
SRA Study Id SRP178948
Study Title Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC metagenome
Study Abstract
  
SRA Study Id SRP113204
Study Title Subsurface microbial communities from deep shales in West Virginia, USA - MSEEL Well Study Marcellus 3H_2016_04_06 metagenome
Study Abstract
  
SRA Study Id SRP111589
Study Title Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S-1-Day9
Study Abstract
  
SRA Study Id SRP113205
Study Title Subsurface microbial communities from deep shales in West Virginia, USA - MSEEL Well Study Marcellus 5H_2016_02_17 metagenome
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2016-03-04
Last Modified By JGI automated process on 2019-06-18
PI Kelly Wrighton
Description Terrestrial deep shales are carbon-rich environments that are a significant component of the U.S. energy portfolio. Moreover these systems represent a poorly sampled microbial frontier, as most research into deep terrestrial life was conducted prior to the advent of high-throughput genomic sequencing. However, recent advances in energy extraction from these environments offer a unique opportunity to study these ecosystems prior to and following energy extraction disturbances.
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Environmental
Ecosystem Category Terrestrial
Ecosystem Type Deep subsurface
Ecosystem Subtype
Specific Ecosystem
STUDY COMPOSITION
Number of Biosamples 96
Number of Organisms 38
Number of Seq Projects 134
Number of Analysis Projects 136
Number of Related Studies 0

 

 

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