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Study

Study Name: Genome sequencing of aromatic compound degrading bacteria and fungi

Projects

Biosamples

Organisms

Biosamples: 0 Seq. Projects: 110
STUDY INFORMATION
GOLD Study ID Gs0118135
Study Name Genome sequencing of aromatic compound degrading bacteria and fungi
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP164142  (Link to NCBI )
Study Title Rhodotorula toruloides APA 2687 Coumarate Gene Expression Profiling - 23 transcriptome
Study Abstract
  
SRA Study Id SRP164141  (Link to NCBI )
Study Title Rhodotorula toruloides APA 2687 Coumarate Gene Expression Profiling - 22 transcriptome
Study Abstract
  
SRA Study Id SRP164144  (Link to NCBI )
Study Title Rhodotorula toruloides APA 2687 Glucose Gene Expression Profiling - 20 transcriptome
Study Abstract
  
SRA Study Id SRP190472  (Link to NCBI )
Study Title Pseudomonas putida mt-2 genome sequencing
Study Abstract
  
SRA Study Id SRP164143  (Link to NCBI )
Study Title Rhodotorula toruloides APA 2687 Glucose Gene Expression Profiling - 21 transcriptome
Study Abstract
  
SRA Study Id SRP164146  (Link to NCBI )
Study Title Rhodotorula toruloides ATCC 26217 Glucose Gene Expression Profiling - 26 transcriptome
Study Abstract
  
SRA Study Id SRP164145  (Link to NCBI )
Study Title Rhodotorula toruloides ATCC 26217 Glucose Gene Expression Profiling - 25 transcriptome
Study Abstract
  
SRA Study Id SRP164148  (Link to NCBI )
Study Title Rhodotorula toruloides ATCC 26217 Coumarate Gene Expression Profiling - 29 transcriptome
Study Abstract
  
SRA Study Id SRP164147  (Link to NCBI )
Study Title Rhodotorula toruloides ATCC 26217 Glucose Gene Expression Profiling - 27 transcriptome
Study Abstract
  
SRA Study Id SRP164149  (Link to NCBI )
Study Title Rhodotorula toruloides ATCC 26217 Coumarate Gene Expression Profiling - 30 transcriptome
Study Abstract
  
SRA Study Id SRP190471  (Link to NCBI )
Study Title Rhodococcus opacus ATCC 51882 genome sequencing
Study Abstract
  
SRA Study Id SRP164140  (Link to NCBI )
Study Title Rhodotorula toruloides APA 2687 Coumarate Gene Expression Profiling - 24 transcriptome
Study Abstract
  
SRA Study Id SRP190489  (Link to NCBI )
Study Title Rhodococcus jostii RHA1 Transcriptome - 46 1
Study Abstract
  
SRA Study Id SRP190488  (Link to NCBI )
Study Title Rhodococcus jostii RHA1 Transcriptome - 46 4
Study Abstract
  
SRA Study Id SRP164139  (Link to NCBI )
Study Title Rhodotorula toruloides APA 2687 Glucose Gene Expression Profiling - 19 transcriptome
Study Abstract
  
SRA Study Id SRP164171  (Link to NCBI )
Study Title Exophiala alcalophila ATCC 48519 Glucose Gene Expression Profiling - 37 transcriptome
Study Abstract
  
SRA Study Id SRP096484  (Link to NCBI )
Study Title Delftia acidovorans ATCC 11299b genome sequencing
Study Abstract
  
SRA Study Id SRP096485  (Link to NCBI )
Study Title Pseudomonas putida KT2440 genome sequencing
Study Abstract
  
SRA Study Id SRP164170  (Link to NCBI )
Study Title Exophiala alcalophila ATCC 48519 Coumarate Gene Expression Profiling - 41 transcriptome
Study Abstract
  
SRA Study Id SRP164164  (Link to NCBI )
Study Title Exophiala alcalophila J33 Coumarate Gene Expression Profiling - 35 transcriptome
Study Abstract
  
SRA Study Id SRP190496  (Link to NCBI )
Study Title Amycolatopsis sp. ATCC 39116 Transcriptome - Am 4
Study Abstract
  
SRA Study Id SRP164163  (Link to NCBI )
Study Title Exophiala alcalophila J33 Glucose Gene Expression Profiling - 32 transcriptome
Study Abstract
  
SRA Study Id SRP190497  (Link to NCBI )
Study Title Amycolatopsis sp. ATCC 39116 Transcriptome - Am 1
Study Abstract
  
SRA Study Id SRP164166  (Link to NCBI )
Study Title Exophiala alcalophila ATCC 48519 Coumarate Gene Expression Profiling - 42 transcriptome
Study Abstract
  
SRA Study Id SRP190494  (Link to NCBI )
Study Title Amycolatopsis sp. ATCC 39116 Transcriptome - Am 2
Study Abstract
  
SRA Study Id SRP190495  (Link to NCBI )
Study Title Amycolatopsis sp. ATCC 39116 Transcriptome - Am 6
Study Abstract
  
SRA Study Id SRP164165  (Link to NCBI )
Study Title Exophiala alcalophila J33 Coumarate Gene Expression Profiling - 34 transcriptome
Study Abstract
  
SRA Study Id SRP164168  (Link to NCBI )
Study Title Exophiala alcalophila ATCC 48519 Glucose Gene Expression Profiling - 39 transcriptome
Study Abstract
  
SRA Study Id SRP164167  (Link to NCBI )
Study Title Exophiala alcalophila ATCC 48519 Glucose Gene Expression Profiling - 38 transcriptome
Study Abstract
  
SRA Study Id SRP190498  (Link to NCBI )
Study Title Amycolatopsis sp. ATCC 39116 Transcriptome - Am 5
Study Abstract
  
SRA Study Id SRP164169  (Link to NCBI )
Study Title Exophiala alcalophila ATCC 48519 Coumarate Gene Expression Profiling - 40 transcriptome
Study Abstract
  
SRA Study Id SRP190492  (Link to NCBI )
Study Title Rhodococcus jostii RHA1 Transcriptome - 46 3
Study Abstract
  
SRA Study Id SRP190493  (Link to NCBI )
Study Title Amycolatopsis sp. ATCC 39116 Transcriptome - Am 3
Study Abstract
  
SRA Study Id SRP190490  (Link to NCBI )
Study Title Rhodococcus jostii RHA1 Transcriptome - 46 5
Study Abstract
  
SRA Study Id SRP190491  (Link to NCBI )
Study Title Rhodococcus jostii RHA1 Transcriptome - 46 2
Study Abstract
  
SRA Study Id SRP164160  (Link to NCBI )
Study Title Exophiala alcalophila J33 Glucose Gene Expression Profiling - 31 transcriptome
Study Abstract
  
SRA Study Id SRP164162  (Link to NCBI )
Study Title Exophiala alcalophila J33 Glucose Gene Expression Profiling - 33 transcriptome
Study Abstract
  
SRA Study Id SRP164161  (Link to NCBI )
Study Title Exophiala alcalophila J33 Coumarate Gene Expression Profiling - 36 transcriptome
Study Abstract
  
SRA Study Id SRP164153  (Link to NCBI )
Study Title Rhodotorula glutinis ATCC 28052 Coumarate Gene Expression Profiling - 16 transcriptome
Study Abstract
  
SRA Study Id SRP164152  (Link to NCBI )
Study Title Rhodotorula glutinis ATCC 28052 Glucose Gene Expression Profiling - 13 transcriptome
Study Abstract
  
SRA Study Id SRP164155  (Link to NCBI )
Study Title Rhodotorula glutinis ATCC 28052 Coumarate Gene Expression Profiling - 18 transcriptome
Study Abstract
  
SRA Study Id SRP164154  (Link to NCBI )
Study Title Rhodotorula glutinis ATCC 28052 Glucose Gene Expression Profiling - 14 transcriptome
Study Abstract
  
SRA Study Id SRP164156  (Link to NCBI )
Study Title Rhodotorula glutinis ATCC 28052 Coumarate Gene Expression Profiling - 17 transcriptome
Study Abstract
  
SRA Study Id SRP183609  (Link to NCBI )
Study Title Delftia acidovorans ATCC 11299b Transcriptome - 14 4
Study Abstract
  
SRA Study Id SRP183606  (Link to NCBI )
Study Title Delftia acidovorans ATCC 11299b Transcriptome - 14 6
Study Abstract
  
SRA Study Id SRP183608  (Link to NCBI )
Study Title Delftia acidovorans ATCC 11299b Transcriptome - 14 2
Study Abstract
  
SRA Study Id SRP183607  (Link to NCBI )
Study Title Delftia acidovorans ATCC 11299b Transcriptome - 14 1
Study Abstract
  
SRA Study Id SRP183611  (Link to NCBI )
Study Title Delftia acidovorans ATCC 11299b Transcriptome - 14 5
Study Abstract
  
SRA Study Id SRP183610  (Link to NCBI )
Study Title Delftia acidovorans ATCC 11299b Transcriptome - 14 3
Study Abstract
  
SRA Study Id SRP164151  (Link to NCBI )
Study Title Rhodotorula glutinis ATCC 28052 Glucose Gene Expression Profiling - 15 transcriptome
Study Abstract
  
SRA Study Id SRP164150  (Link to NCBI )
Study Title Rhodotorula toruloides ATCC 26217 Coumarate Gene Expression Profiling - 28 transcriptome
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2016-01-29
Last Modified By JGI automated process on 2019-06-18
PI John Gladden
Description Understanding aromatic compound degradation and catabolism in different bacteria and fungi. These organisms have been demonstrated to grow on monolignols and lignin, and we wish to engineer them to convert lignin to value-added bioproducts.
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study No
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem
Ecosystem Category
Ecosystem Type
Ecosystem Subtype
Specific Ecosystem
STUDY COMPOSITION
Number of Biosamples 0
Number of Organisms 39
Number of Seq Projects 110
Number of Analysis Projects 10
Number of Related Studies 0

 

 

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