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Study

Study Name: Genome sequencing of aromatic compound degrading bacteria and fungi

Projects

Biosamples

Organisms

Biosamples: 0 Seq. Projects: 110
STUDY INFORMATION
GOLD Study ID Gs0118135
Study Name Genome sequencing of aromatic compound degrading bacteria and fungi
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP164142
Study Title Rhodotorula toruloides APA 2687 Coumarate Gene Expression Profiling - 23 transcriptome
Study Abstract
  
SRA Study Id SRP164141
Study Title Rhodotorula toruloides APA 2687 Coumarate Gene Expression Profiling - 22 transcriptome
Study Abstract
  
SRA Study Id SRP164144
Study Title Rhodotorula toruloides APA 2687 Glucose Gene Expression Profiling - 20 transcriptome
Study Abstract
  
SRA Study Id SRP190472
Study Title Pseudomonas putida mt-2 genome sequencing
Study Abstract
  
SRA Study Id SRP164143
Study Title Rhodotorula toruloides APA 2687 Glucose Gene Expression Profiling - 21 transcriptome
Study Abstract
  
SRA Study Id SRP164146
Study Title Rhodotorula toruloides ATCC 26217 Glucose Gene Expression Profiling - 26 transcriptome
Study Abstract
  
SRA Study Id SRP164145
Study Title Rhodotorula toruloides ATCC 26217 Glucose Gene Expression Profiling - 25 transcriptome
Study Abstract
  
SRA Study Id SRP164148
Study Title Rhodotorula toruloides ATCC 26217 Coumarate Gene Expression Profiling - 29 transcriptome
Study Abstract
  
SRA Study Id SRP164147
Study Title Rhodotorula toruloides ATCC 26217 Glucose Gene Expression Profiling - 27 transcriptome
Study Abstract
  
SRA Study Id SRP164149
Study Title Rhodotorula toruloides ATCC 26217 Coumarate Gene Expression Profiling - 30 transcriptome
Study Abstract
  
SRA Study Id SRP190471
Study Title Rhodococcus opacus ATCC 51882 genome sequencing
Study Abstract
  
SRA Study Id SRP164140
Study Title Rhodotorula toruloides APA 2687 Coumarate Gene Expression Profiling - 24 transcriptome
Study Abstract
  
SRA Study Id SRP190489
Study Title Rhodococcus jostii RHA1 Transcriptome - 46 1
Study Abstract
  
SRA Study Id SRP190488
Study Title Rhodococcus jostii RHA1 Transcriptome - 46 4
Study Abstract
  
SRA Study Id SRP164139
Study Title Rhodotorula toruloides APA 2687 Glucose Gene Expression Profiling - 19 transcriptome
Study Abstract
  
SRA Study Id SRP164171
Study Title Exophiala alcalophila ATCC 48519 Glucose Gene Expression Profiling - 37 transcriptome
Study Abstract
  
SRA Study Id SRP096484
Study Title Delftia acidovorans ATCC 11299b genome sequencing
Study Abstract
  
SRA Study Id SRP096485
Study Title Pseudomonas putida KT2440 genome sequencing
Study Abstract
  
SRA Study Id SRP164170
Study Title Exophiala alcalophila ATCC 48519 Coumarate Gene Expression Profiling - 41 transcriptome
Study Abstract
  
SRA Study Id SRP164164
Study Title Exophiala alcalophila J33 Coumarate Gene Expression Profiling - 35 transcriptome
Study Abstract
  
SRA Study Id SRP190496
Study Title Amycolatopsis sp. ATCC 39116 Transcriptome - Am 4
Study Abstract
  
SRA Study Id SRP164163
Study Title Exophiala alcalophila J33 Glucose Gene Expression Profiling - 32 transcriptome
Study Abstract
  
SRA Study Id SRP190497
Study Title Amycolatopsis sp. ATCC 39116 Transcriptome - Am 1
Study Abstract
  
SRA Study Id SRP164166
Study Title Exophiala alcalophila ATCC 48519 Coumarate Gene Expression Profiling - 42 transcriptome
Study Abstract
  
SRA Study Id SRP190494
Study Title Amycolatopsis sp. ATCC 39116 Transcriptome - Am 2
Study Abstract
  
SRA Study Id SRP190495
Study Title Amycolatopsis sp. ATCC 39116 Transcriptome - Am 6
Study Abstract
  
SRA Study Id SRP164165
Study Title Exophiala alcalophila J33 Coumarate Gene Expression Profiling - 34 transcriptome
Study Abstract
  
SRA Study Id SRP164168
Study Title Exophiala alcalophila ATCC 48519 Glucose Gene Expression Profiling - 39 transcriptome
Study Abstract
  
SRA Study Id SRP164167
Study Title Exophiala alcalophila ATCC 48519 Glucose Gene Expression Profiling - 38 transcriptome
Study Abstract
  
SRA Study Id SRP190498
Study Title Amycolatopsis sp. ATCC 39116 Transcriptome - Am 5
Study Abstract
  
SRA Study Id SRP164169
Study Title Exophiala alcalophila ATCC 48519 Coumarate Gene Expression Profiling - 40 transcriptome
Study Abstract
  
SRA Study Id SRP190492
Study Title Rhodococcus jostii RHA1 Transcriptome - 46 3
Study Abstract
  
SRA Study Id SRP190493
Study Title Amycolatopsis sp. ATCC 39116 Transcriptome - Am 3
Study Abstract
  
SRA Study Id SRP190490
Study Title Rhodococcus jostii RHA1 Transcriptome - 46 5
Study Abstract
  
SRA Study Id SRP190491
Study Title Rhodococcus jostii RHA1 Transcriptome - 46 2
Study Abstract
  
SRA Study Id SRP164160
Study Title Exophiala alcalophila J33 Glucose Gene Expression Profiling - 31 transcriptome
Study Abstract
  
SRA Study Id SRP164162
Study Title Exophiala alcalophila J33 Glucose Gene Expression Profiling - 33 transcriptome
Study Abstract
  
SRA Study Id SRP164161
Study Title Exophiala alcalophila J33 Coumarate Gene Expression Profiling - 36 transcriptome
Study Abstract
  
SRA Study Id SRP164153
Study Title Rhodotorula glutinis ATCC 28052 Coumarate Gene Expression Profiling - 16 transcriptome
Study Abstract
  
SRA Study Id SRP164152
Study Title Rhodotorula glutinis ATCC 28052 Glucose Gene Expression Profiling - 13 transcriptome
Study Abstract
  
SRA Study Id SRP164155
Study Title Rhodotorula glutinis ATCC 28052 Coumarate Gene Expression Profiling - 18 transcriptome
Study Abstract
  
SRA Study Id SRP164154
Study Title Rhodotorula glutinis ATCC 28052 Glucose Gene Expression Profiling - 14 transcriptome
Study Abstract
  
SRA Study Id SRP164156
Study Title Rhodotorula glutinis ATCC 28052 Coumarate Gene Expression Profiling - 17 transcriptome
Study Abstract
  
SRA Study Id SRP183609
Study Title Delftia acidovorans ATCC 11299b Transcriptome - 14 4
Study Abstract
  
SRA Study Id SRP183606
Study Title Delftia acidovorans ATCC 11299b Transcriptome - 14 6
Study Abstract
  
SRA Study Id SRP183608
Study Title Delftia acidovorans ATCC 11299b Transcriptome - 14 2
Study Abstract
  
SRA Study Id SRP183607
Study Title Delftia acidovorans ATCC 11299b Transcriptome - 14 1
Study Abstract
  
SRA Study Id SRP183611
Study Title Delftia acidovorans ATCC 11299b Transcriptome - 14 5
Study Abstract
  
SRA Study Id SRP183610
Study Title Delftia acidovorans ATCC 11299b Transcriptome - 14 3
Study Abstract
  
SRA Study Id SRP164151
Study Title Rhodotorula glutinis ATCC 28052 Glucose Gene Expression Profiling - 15 transcriptome
Study Abstract
  
SRA Study Id SRP164150
Study Title Rhodotorula toruloides ATCC 26217 Coumarate Gene Expression Profiling - 28 transcriptome
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2016-01-29
Last Modified By JGI automated process on 2019-06-18
PI John Gladden
Description Understanding aromatic compound degradation and catabolism in different bacteria and fungi. These organisms have been demonstrated to grow on monolignols and lignin, and we wish to engineer them to convert lignin to value-added bioproducts.
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study No
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem
Ecosystem Category
Ecosystem Type
Ecosystem Subtype
Specific Ecosystem
STUDY COMPOSITION
Number of Biosamples 0
Number of Organisms 39
Number of Seq Projects 110
Number of Analysis Projects 10
Number of Related Studies 0

 

 

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