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Study

Study Name: Desulfitobacterium hafniense PCE-S

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Biosamples: 0 Seq. Projects: 1
STUDY INFORMATION
GOLD Study ID Gs0114118
Study Name Desulfitobacterium hafniense PCE-S
Other Names Draft genome sequence and characterization of Desulfitobacterium hafniense PCE-S
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject Accession
SRA Studies
SRA Study Id ERP006345  (Link to NCBI )
Study Title genome sequence of Desulfitobacterium hafniense PCE-S
Study Abstract The bacterium Desulfitobacterium hafniense PCE-S was sequenced and investigated.
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2015-01-27
Last Modified By JGI automated process on 2019-09-06
PI Unknown
Description This genome report describes the draft genome and the physiological characteristics of Desulfitobacterium hafniense PCE-S, a Gram-positive bacterium known to dechlorinate tetrachloroethene (PCE) to dichloroethene by a PCE reductive dehalogenase. The draft genome has a size of 5,666,696 bp with a G¿+¿C content of 47.3%. The genome is very similar to the already sequenced Desulfitobacterium hafniense Y51 and the type strain DCB-2. We identified two complete reductive dehalogenase (rdh) genes in the genome of D. hafniense PCE-S, one of which encodes PceA, the PCE reductive dehalogenase, and is located on a transposon. Interestingly, this transposon structure differs from the PceA-containing transposon of D. hafniense Y51. The second rdh encodes an unknown reductive dehalogenase, highly similar to rdhA 7 found in D. hafniense DCB-2, in which the corresponding gene is disrupted. This reductive dehalogenase might be responsible for the reductive dechlorination of 2,4,5-trichlorophenol and pentachlorophenol, which is mediated by D. hafniense PCE-S in addition to the reductive dechlorination of PCE.
Relevance
Study Information Visibility Public
Metagenomic Study No
Publication
Is GEBA No
Is HMP No
ECOSYSTEM CLASSIFICATION
Ecosystem Engineered
Ecosystem Category Bioreactor
Ecosystem Type Unclassified
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
Ecosystem Path ID 4280
STUDY COMPOSITION
Number of Biosamples 0
Number of Organisms 1
Number of Seq Projects 1
Number of Analysis Projects 0
Number of Related Studies 0

 

 

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