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Study

Study Name: Streptococcus pneumoniae TIGR4

Projects

Biosamples

Organisms

Biosamples: 0 Seq. Projects: 2
STUDY INFORMATION
GOLD Study ID Gs0033251
Study Name Streptococcus pneumoniae TIGR4
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP009303
Study Title Genome sequencing with short reads
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2012-07-30
Last Modified By
PI David B. Jaffe
Description To test methods for de novo genome assembly using Illumina and Pacific Biosciences shotgun data, microbial genomes with finished reference sequences were selected. Streptococcus pneumoniae TIGR4 was one of these microbial genomes. At least one Pacific Biosciences library (long fragment) and two Illumina libraries (short fragment and jumping) were generated and sequenced. Genomic DNA from Claudette Thompson. Two different genome assemblies are part of this project. The assembly in AKBW00000000 is the complete chromosome assembled from Illumina reads. The assembly in AKVY00000000 is the complete chromosome assembled from reads used to assemble AE005672 plus reads from a different isolate of the strain.
Relevance Medical
Study Information Link
Study Information Visibility Public
Metagenomic Study No
Publication
Is GEBA No
Is HMP No
ECOSYSTEM CLASSIFICATION
Ecosystem
Ecosystem Category
Ecosystem Type
Ecosystem Subtype
Specific Ecosystem
STUDY COMPOSITION
Number of Biosamples 0
Number of Organisms 1
Number of Seq Projects 2
Number of Analysis Projects 2
Number of Related Studies 0

 

 

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