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Study

Study Name: Deciphering the Interactome of Dothideomycete-bioenergy crops

Projects

Biosamples

Organisms

Biosamples: 48 Seq. Projects: 394
STUDY INFORMATION
GOLD Study ID Gs0011981
Study Name Deciphering the Interactome of Dothideomycete-bioenergy crops
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP137360
Study Title Gene expression profiling of Setosphaeria turcica NY001 inoculated Zea mays NIL (Susceptible) 10dpi - 96
Study Abstract
  
SRA Study Id SRP137361
Study Title Gene expression profiling of Setosphaeria turcica 28A inoculated Zea mays NIL (Resistant) 10dpi - 82
Study Abstract
  
SRA Study Id SRP121997
Study Title Setosphaeria turcica NY001 Gene Expression Profiling - 106
Study Abstract
  
SRA Study Id SRP137184
Study Title Triticum aestivum Cadenza Gene Expression Profiling - cad 2 mock 3 transcriptome
Study Abstract
  
SRA Study Id SRP121998
Study Title Setosphaeria turcica NY001 Gene Expression Profiling - 104
Study Abstract
  
SRA Study Id SRP137185
Study Title Zymoseptoria tritici IPO-90006 Gene Expression Profiling - 90006-4 ypd lux transcriptome
Study Abstract
  
SRA Study Id SRP137340
Study Title Gene expression profiling of Setosphaeria turcica 28A inoculated Zea mays NIL (Resistant) 5dpi - 36
Study Abstract
  
SRA Study Id SRP137186
Study Title Triticum aestivum Cadenza Gene Expression Profiling - cad 15 mock 4 transcriptome
Study Abstract
  
SRA Study Id SRP137187
Study Title Triticum aestivum Cadenza Gene Expression Profiling - cad 7 mock 1 transcriptome
Study Abstract
  
SRA Study Id SRP137341
Study Title Setosphaeria turcica 28A and NY001 - Zea may B73 (S and R) Gene Expression Profiling - 2 transcriptome
Study Abstract
  
SRA Study Id SRP137342
Study Title Gene expression profiling of Setosphaeria turcica 28A inoculated Zea mays NIL (Susceptible) 7dpi - 61
Study Abstract
  
SRA Study Id SRP137188
Study Title Zymoseptoria tritici IPO-90006 Gene Expression Profiling - cad 2 avr 1 transcriptome
Study Abstract
  
SRA Study Id SRP137189
Study Title Triticum aestivum Cadenza Gene Expression Profiling - cad 15 mock 5 transcriptome
Study Abstract
  
SRA Study Id SRP137343
Study Title Gene expression profiling of Setosphaeria turcica NY001 inoculated Zea mays NIL (Susceptible) 7dpi - 72
Study Abstract
  
SRA Study Id SRP137344
Study Title Gene expression profiling of Setosphaeria turcica 28A inoculated Zea mays NIL (Resistant) 7dpi - 60
Study Abstract
  
SRA Study Id SRP121996
Study Title Setosphaeria turcica NY001 Gene Expression Profiling - 105
Study Abstract
  
SRA Study Id SRP137345
Study Title Gene expression profiling of Setosphaeria turcica NY001 inoculated Zea mays NIL (Resistant) 3dpi - 21
Study Abstract
  
SRA Study Id SRP137346
Study Title Zea may B73 R Gene Expression Profiling - 50 -7dpi transcriptome
Study Abstract
  
SRA Study Id SRP137347
Study Title Zea may B73 R Gene Expression Profiling - 51 -7dpi transcriptome
Study Abstract
  
SRA Study Id SRP137348
Study Title Zea may B73 S Gene Expression Profiling - 30 -5dpi transcriptome
Study Abstract
  
SRA Study Id SRP137349
Study Title Gene expression profiling of Setosphaeria turcica NY001 inoculated Zea mays NIL (Susceptible) 7dpi - 70
Study Abstract
  
SRA Study Id SRP137194
Study Title Zymoseptoria tritici IPO-90006 Gene Expression Profiling - cad 2 vir 5 transcriptome
Study Abstract
  
SRA Study Id SRP137195
Study Title Zymoseptoria tritici IPO-90006 Gene Expression Profiling - cad 7 vir 2 transcriptome
Study Abstract
  
SRA Study Id SRP083245
Study Title Setosphaeria turcica NY001 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP137196
Study Title Zymoseptoria tritici IPO-90006 Gene Expression Profiling - cad 10 avr 4 transcriptome
Study Abstract
  
SRA Study Id SRP137350
Study Title Gene expression profiling of Setosphaeria turcica NY001 inoculated Zea mays NIL (Susceptible) 3dpi - 22
Study Abstract
  
SRA Study Id SRP137197
Study Title Zymoseptoria tritici IPO-90006 Gene Expression Profiling - cad 10 avr 5 transcriptome
Study Abstract
  
SRA Study Id SRP137351
Study Title Gene expression profiling of Setosphaeria turcica NY001 inoculated Zea mays NIL (Susceptible) 10dpi - 94
Study Abstract
  
SRA Study Id SRP137198
Study Title Zymoseptoria tritici IPO-90006 Gene Expression Profiling - cad 2 vir 1 transcriptome
Study Abstract
  
SRA Study Id SRP137352
Study Title Gene expression profiling of Setosphaeria turcica 28A inoculated Zea mays NIL (Susceptible) 10dpi - 86
Study Abstract
  
SRA Study Id SRP137353
Study Title Gene expression profiling of Setosphaeria turcica NY001 inoculated Zea mays NIL (Resistant) 10dpi - 91
Study Abstract
  
SRA Study Id SRP137199
Study Title Zymoseptoria tritici IPO-90006 Gene Expression Profiling - cad 2 avr 5 transcriptome
Study Abstract
  
SRA Study Id SRP137354
Study Title Gene expression profiling of Setosphaeria turcica NY001 inoculated Zea mays NIL (Susceptible) 5dpi - 47
Study Abstract
  
SRA Study Id SRP137355
Study Title Gene expression profiling of Setosphaeria turcica 28A inoculated Zea mays NIL (Resistant) 3dpi - 10
Study Abstract
  
SRA Study Id SRP137190
Study Title Triticum aestivum Cadenza Gene Expression Profiling - cad 7 mock 4 transcriptome
Study Abstract
  
SRA Study Id SRP137191
Study Title Triticum aestivum Cadenza Gene Expression Profiling - cad 7 mock 5 transcriptome
Study Abstract
  
SRA Study Id SRP137192
Study Title Zymoseptoria tritici IPO-90006 Gene Expression Profiling - 90006-2 ypd lux transcriptome
Study Abstract
  
SRA Study Id SRP137193
Study Title Triticum aestivum Cadenza Gene Expression Profiling - cad 15 mock 3 transcriptome
Study Abstract
  
SRA Study Id SRP137356
Study Title Gene expression profiling of Setosphaeria turcica 28A inoculated Zea mays NIL (Resistant) 3dpi - 11
Study Abstract
  
SRA Study Id SRP137357
Study Title Zea may B73 S Gene Expression Profiling - 6 -3dpi transcriptome
Study Abstract
  
SRA Study Id SRP137358
Study Title Gene expression profiling of Setosphaeria turcica 28A inoculated Zea mays NIL (Resistant) 10dpi - 83
Study Abstract
  
SRA Study Id SRP137359
Study Title Gene expression profiling of Setosphaeria turcica 28A inoculated Zea mays NIL (Resistant) 10dpi - 84
Study Abstract
  
SRA Study Id SRP137161
Study Title Cochliobolus sativus ND4008 - Brachypodium distachyon Gene Expression Profiling - 4008-3-2
Study Abstract
  
SRA Study Id SRP137162
Study Title Cochliobolus sativus ND4008 Gene Expression Profiling - 4008-AXENIC-2
Study Abstract
  
SRA Study Id SRP137163
Study Title Cochliobolus sativus ND4008 - Brachypodium distachyon Gene Expression Profiling - 4008-7-3
Study Abstract
  
SRA Study Id SRP137164
Study Title Brachypodium distachyon Bd21 mock inoculation Gene Expression Profiling - WATER-7-2 transcriptome
Study Abstract
  
SRA Study Id SRP137165
Study Title Cochliobolus sativus ND4008 - Brachypodium distachyon Gene Expression Profiling - 4008-3-3
Study Abstract
  
SRA Study Id SRP137320
Study Title Gene expression profiling of Setosphaeria turcica 28A inoculated Zea mays NIL (Susceptible) 5dpi - 37
Study Abstract
  
SRA Study Id SRP137166
Study Title Cochliobolus sativus ND85F - Brachypodium distachyon Gene Expression Profiling - 85F-3-1
Study Abstract
  
SRA Study Id SRP137167
Study Title Cochliobolus sativus ND4008 Gene Expression Profiling - 4008-AXENIC-1
Study Abstract
  
SRA Study Id SRP137321
Study Title Zea may B73 S Gene Expression Profiling - 5 -3dpi transcriptome
Study Abstract
  
SRA Study Id SRP137200
Study Title Zymoseptoria tritici IPO-90006 Gene Expression Profiling - 90006-1 ypd lux transcriptome
Study Abstract
  
SRA Study Id SRP137322
Study Title Zea may B73 S Gene Expression Profiling - 77 -10dpi transcriptome
Study Abstract
  
SRA Study Id SRP137201
Study Title Zymoseptoria tritici IPO-90006 Gene Expression Profiling - cad 10 avr 3 transcriptome
Study Abstract
  
SRA Study Id SRP137168
Study Title Cochliobolus sativus ND85F Gene Expression Profiling - 85F-AXENIC-3
Study Abstract
  
SRA Study Id SRP137160
Study Title Cochliobolus sativus ND4008 - Brachypodium distachyon Gene Expression Profiling - 4008-1-2
Study Abstract
  
SRA Study Id SRP137202
Study Title Zymoseptoria tritici IPO-90006 Gene Expression Profiling - cad 10 vir 1 transcriptome
Study Abstract
  
SRA Study Id SRP137323
Study Title Gene expression profiling of Setosphaeria turcica NY001 inoculated Zea mays NIL (Resistant) 5dpi - 43
Study Abstract
  
SRA Study Id SRP137169
Study Title Cochliobolus sativus ND4008 - Brachypodium distachyon Gene Expression Profiling - 4008-7-1
Study Abstract
  
SRA Study Id SRP137324
Study Title Gene expression profiling of Setosphaeria turcica NY001 inoculated Zea mays NIL (Resistant) 5dpi - 44
Study Abstract
  
SRA Study Id SRP137203
Study Title Zymoseptoria tritici IPO-90006 Gene Expression Profiling - cad 7 vir 4 transcriptome
Study Abstract
  
SRA Study Id SRP137325
Study Title Gene expression profiling of Setosphaeria turcica 28A inoculated Zea mays NIL (Resistant) 5dpi - 34
Study Abstract
  
SRA Study Id SRP137204
Study Title Zymoseptoria tritici IPO-90006 Gene Expression Profiling - cad 15 vir 5 transcriptome
Study Abstract
  
SRA Study Id SRP137205
Study Title Triticum aestivum Cadenza Gene Expression Profiling - cad 2 mock 2 transcriptome
Study Abstract
  
SRA Study Id SRP137326
Study Title Gene expression profiling of Setosphaeria turcica 28A inoculated Zea mays NIL (Resistant) 3dpi - 12
Study Abstract
  
SRA Study Id SRP137206
Study Title Triticum aestivum Cadenza Gene Expression Profiling - cad 10 mock 4 transcriptome
Study Abstract
  
SRA Study Id SRP137327
Study Title Gene expression profiling of Setosphaeria turcica 28A inoculated Zea mays NIL (Susceptible) 7dpi - 62
Study Abstract
  
SRA Study Id SRP137328
Study Title Zea may B73 R Gene Expression Profiling - 25 -5dpi transcriptome
Study Abstract
  
SRA Study Id SRP137207
Study Title Triticum aestivum Cadenza Gene Expression Profiling - cad 10 mock 3 transcriptome
Study Abstract
  
SRA Study Id SRP137329
Study Title Zea may B73 R Gene Expression Profiling - 74 -10dpi transcriptome
Study Abstract
  
SRA Study Id SRP137208
Study Title Triticum aestivum Cadenza Gene Expression Profiling - cad 10 mock 5 transcriptome
Study Abstract
  
SRA Study Id SRP137209
Study Title Zymoseptoria tritici IPO-90006 Gene Expression Profiling - cad 15 vir 4 - redo transcriptome
Study Abstract
  
SRA Study Id SRP137172
Study Title Brachypodium distachyon Bd21 mock inoculation Gene Expression Profiling - WATER-7-1 transcriptome
Study Abstract
  
SRA Study Id SRP137293
Study Title Gene expression profiling of Setosphaeria turcica 28A inoculated Zea mays NIL (Susceptible) 3dpi - 15
Study Abstract
  
SRA Study Id SRP137173
Study Title Cochliobolus sativus ND85F - Brachypodium distachyon Gene Expression Profiling - 85F-3-2
Study Abstract
  
SRA Study Id SRP137294
Study Title Gene expression profiling of Setosphaeria turcica NY001 inoculated Zea mays NIL (Resistant) 3dpi - 19
Study Abstract
  
SRA Study Id SRP137174
Study Title Brachypodium distachyon Bd21 mock inoculation Gene Expression Profiling - WATER-1-1 transcriptome
Study Abstract
  
SRA Study Id SRP137295
Study Title Gene expression profiling of Setosphaeria turcica NY001 inoculated Zea mays NIL (Susceptible) 5dpi - 46
Study Abstract
  
SRA Study Id SRP137175
Study Title Brachypodium distachyon Bd21 mock inoculation Gene Expression Profiling - WATER-3-1 transcriptome
Study Abstract
  
SRA Study Id SRP137296
Study Title Zea may B73 R Gene Expression Profiling - 3 -3dpi transcriptome
Study Abstract
  
SRA Study Id SRP137297
Study Title Gene expression profiling of Setosphaeria turcica 28A inoculated Zea mays NIL (Susceptible) 7dpi - 63
Study Abstract
  
SRA Study Id SRP137330
Study Title Zea may B73 S Gene Expression Profiling - 54 -7dpi transcriptome
Study Abstract
  
SRA Study Id SRP137176
Study Title Cochliobolus sativus ND85F Gene Expression Profiling - 85F-AXENIC-1
Study Abstract
  
SRA Study Id SRP137177
Study Title Cochliobolus sativus ND85F Gene Expression Profiling - 85F-AXENIC-2
Study Abstract
  
SRA Study Id SRP137298
Study Title Zea may B73 S Gene Expression Profiling - 4 -3dpi transcriptome
Study Abstract
  
SRA Study Id SRP137331
Study Title Gene expression profiling of Setosphaeria turcica NY001 inoculated Zea mays NIL (Resistant) 3dpi - 20
Study Abstract
  
SRA Study Id SRP137210
Study Title Zymoseptoria tritici IPO-90006 Gene Expression Profiling - cad 7 vir 5 - redo transcriptome
Study Abstract
  
SRA Study Id SRP137299
Study Title Gene expression profiling of Setosphaeria turcica NY001 inoculated Zea mays NIL (Resistant) 7dpi - 67
Study Abstract
  
SRA Study Id SRP137211
Study Title Zymoseptoria tritici IPO-90006 Gene Expression Profiling - cad 10 vir 5 transcriptome
Study Abstract
  
SRA Study Id SRP137332
Study Title Gene expression profiling of Setosphaeria turcica 28A inoculated Zea mays NIL (Susceptible) 3dpi - 14
Study Abstract
  
SRA Study Id SRP137212
Study Title Zymoseptoria tritici IPO-90006 Gene Expression Profiling - cad 10 vir 4 transcriptome
Study Abstract
  
SRA Study Id SRP137333
Study Title Gene expression profiling of Setosphaeria turcica 28A inoculated Zea mays NIL (Susceptible) 10dpi - 87
Study Abstract
  
SRA Study Id SRP137290
Study Title Zea may B73 S Gene Expression Profiling - 52 -7dpi transcriptome
Study Abstract
  
SRA Study Id SRP137170
Study Title Cochliobolus sativus ND4008 - Brachypodium distachyon Gene Expression Profiling - 4008-3-1
Study Abstract
  
SRA Study Id SRP137291
Study Title Gene expression profiling of Setosphaeria turcica 28A inoculated Zea mays NIL (Susceptible) 3dpi - 13
Study Abstract
  
SRA Study Id SRP137292
Study Title Zea may B73 R Gene Expression Profiling - 49 -7dpi transcriptome
Study Abstract
  
SRA Study Id SRP137171
Study Title Cochliobolus sativus ND4008 - Brachypodium distachyon Gene Expression Profiling - 4008-1-1
Study Abstract
  
SRA Study Id SRP137213
Study Title Triticum aestivum Cadenza Gene Expression Profiling - cad 2 mock 1 transcriptome
Study Abstract
  
SRA Study Id SRP137334
Study Title Zea may B73 S Gene Expression Profiling - 29 -5dpi transcriptome
Study Abstract
  
SRA Study Id SRP137335
Study Title Zea may B73 R Gene Expression Profiling - 75 -10dpi transcriptome
Study Abstract
  
SRA Study Id SRP137214
Study Title Zymoseptoria tritici IPO-90006 Gene Expression Profiling - cad 2 vir 3 transcriptome
Study Abstract
  
SRA Study Id SRP137215
Study Title Zymoseptoria tritici IPO-90006 Gene Expression Profiling - cad 2 avr 4 transcriptome
Study Abstract
  
SRA Study Id SRP137336
Study Title Gene expression profiling of Setosphaeria turcica NY001 inoculated Zea mays NIL (Resistant) 7dpi - 69
Study Abstract
  
SRA Study Id SRP137337
Study Title Zea may B73 S Gene Expression Profiling - 76 -10dpi transcriptome
Study Abstract
  
SRA Study Id SRP137217
Study Title Zymoseptoria tritici IPO-90006 Gene Expression Profiling - cad 15 vir 5 - redo transcriptome
Study Abstract
  
SRA Study Id SRP137338
Study Title Gene expression profiling of Setosphaeria turcica NY001 inoculated Zea mays NIL (Susceptible) 3dpi - 23
Study Abstract
  
SRA Study Id SRP137339
Study Title Gene expression profiling of Setosphaeria turcica 28A inoculated Zea mays NIL (Susceptible) 5dpi - 39
Study Abstract
  
SRA Study Id SRP137300
Study Title Gene expression profiling of Setosphaeria turcica NY001 inoculated Zea mays NIL (Susceptible) 7dpi - 71
Study Abstract
  
SRA Study Id SRP137309
Study Title Gene expression profiling of Setosphaeria turcica NY001 inoculated Zea mays NIL (Susceptible) 3dpi - 24
Study Abstract
  
SRA Study Id SRP137301
Study Title Zea may B73 R Gene Expression Profiling - 26 -5dpi transcriptome
Study Abstract
  
SRA Study Id SRP137302
Study Title Zea may B73 R Gene Expression Profiling - 27 -5dpi transcriptome
Study Abstract
  
SRA Study Id SRP137303
Study Title Zea may B73 S Gene Expression Profiling - water inoculated maize S NIL -10dpi transcriptome
Study Abstract
  
SRA Study Id SRP137304
Study Title Zea may B73 S Gene Expression Profiling - 28 -5dpi transcriptome
Study Abstract
  
SRA Study Id SRP137305
Study Title Gene expression profiling of Setosphaeria turcica NY001 inoculated Zea mays NIL (Resistant) 7dpi - 68
Study Abstract
  
SRA Study Id SRP137306
Study Title Zea may B73 S Gene Expression Profiling - 53 -7dpi transcriptome
Study Abstract
  
SRA Study Id SRP137307
Study Title Gene expression profiling of Setosphaeria turcica 28A inoculated Zea mays NIL (Resistant) 5dpi - 35
Study Abstract
  
SRA Study Id SRP137308
Study Title Setosphaeria turcica NY001 - Zea may B73 S Gene Expression Profiling - NY001 inoculated maize S NIL -5dpi transcriptome
Study Abstract
  
SRA Study Id SRP137154
Study Title Cochliobolus sativus ND85F - Brachypodium distachyon Gene Expression Profiling - 85F-3-3
Study Abstract
  
SRA Study Id SRP137155
Study Title Cochliobolus sativus ND4008 - Brachypodium distachyon Gene Expression Profiling - 4008-7-2
Study Abstract
  
SRA Study Id SRP137156
Study Title Cochliobolus sativus ND4008 Gene Expression Profiling - 4008-AXENIC-3
Study Abstract
  
SRA Study Id SRP137310
Study Title Gene expression profiling of Setosphaeria turcica 28A inoculated Zea mays NIL (Resistant) 7dpi - 59
Study Abstract
  
SRA Study Id SRP137311
Study Title Gene expression profiling of Setosphaeria turcica 28A inoculated Zea mays NIL (Resistant) 7dpi - 58
Study Abstract
  
SRA Study Id SRP137157
Study Title Brachypodium distachyon Bd21 mock inoculation Gene Expression Profiling - WATER-3-2 transcriptome
Study Abstract
  
SRA Study Id SRP137158
Study Title Cochliobolus sativus ND4008 - Brachypodium distachyon Gene Expression Profiling - 4008-1-3
Study Abstract
  
SRA Study Id SRP137312
Study Title Setosphaeria turcica 28A and NY001 - Zea may B73 (S and R) Gene Expression Profiling - 1 transcriptome
Study Abstract
  
SRA Study Id SRP137159
Study Title Brachypodium distachyon Bd21 mock inoculation Gene Expression Profiling - WATER-1-2 transcriptome
Study Abstract
  
SRA Study Id SRP137313
Study Title Gene expression profiling of Setosphaeria turcica 28A inoculated Zea mays NIL (Susceptible) 5dpi - 38
Study Abstract
  
SRA Study Id SRP137314
Study Title Gene expression profiling of Setosphaeria turcica NY001 inoculated Zea mays NIL (Resistant) 5dpi - 45
Study Abstract
  
SRA Study Id SRP137315
Study Title Zea may B73 R Gene Expression Profiling - 73 -10dpi transcriptome
Study Abstract
  
SRA Study Id SRP137316
Study Title Gene expression profiling of Setosphaeria turcica 28A inoculated Zea mays NIL (Susceptible) 10dpi - 85
Study Abstract
  
SRA Study Id SRP137317
Study Title Gene expression profiling of Setosphaeria turcica NY001 inoculated Zea mays NIL (Resistant) 10dpi - 92
Study Abstract
  
SRA Study Id SRP137318
Study Title Gene expression profiling of Setosphaeria turcica NY001 inoculated Zea mays NIL (Susceptible) 10dpi - 95
Study Abstract
  
SRA Study Id SRP137319
Study Title Gene expression profiling of Setosphaeria turcica NY001 inoculated Zea mays NIL (Resistant) 10dpi - 93
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2013-02-08
Last Modified By JGI automated process on 2019-09-06
PI Gerrit H. Kema
Description Develop a better understanding of fungal – plant interactions by using three complementary approaches: RNAseq, Genome Wide Association Studies and bulk sequencing
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA No
Is HMP No
ECOSYSTEM CLASSIFICATION
Ecosystem Host-associated
Ecosystem Category Plants
Ecosystem Type Phylloplane
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 48
Number of Organisms 172
Number of Seq Projects 394
Number of Analysis Projects 0
Number of Related Studies 0

 

 

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