SRA STUDY
SRA Study Id ERP112886  (Link to NCBI )
Study Title Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics
SRA Experiments
SRA Experiment Id ERX3013239  (Link to NCBI )
Experiment Title Illumina HiSeq 1500 paired end sequencing; Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name Sample 5_p
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_1500
   
SRA Experiment Id ERX3013249  (Link to NCBI )
Experiment Title Illumina HiSeq 1500 paired end sequencing; Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name Sample 16_p
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_1500
   
SRA Experiment Id ERX3013238  (Link to NCBI )
Experiment Title Illumina HiSeq 1500 paired end sequencing; Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name Sample 4_p
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_1500
   
SRA Experiment Id ERX3013248  (Link to NCBI )
Experiment Title Illumina HiSeq 1500 paired end sequencing; Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name Sample 15_p
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_1500
   
SRA Experiment Id ERX3013237  (Link to NCBI )
Experiment Title Illumina HiSeq 1500 paired end sequencing; Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name Sample 3_p
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_1500
   
SRA Experiment Id ERX3013236  (Link to NCBI )
Experiment Title Illumina HiSeq 1500 paired end sequencing; Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name Sample 2_p
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_1500
   
SRA Experiment Id ERX3013247  (Link to NCBI )
Experiment Title Illumina HiSeq 1500 paired end sequencing; Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name Sample 14_p
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_1500
   
SRA Experiment Id ERX3013235  (Link to NCBI )
Experiment Title Illumina HiSeq 1500 paired end sequencing; Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name Sample 1_p
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_1500
   
SRA Experiment Id ERX3013246  (Link to NCBI )
Experiment Title Illumina HiSeq 1500 paired end sequencing; Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name Sample 13_p
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_1500
   
SRA Experiment Id ERX3013245  (Link to NCBI )
Experiment Title Illumina HiSeq 1500 paired end sequencing; Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name Sample 12_p
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_1500
   
SRA Experiment Id ERX3013244  (Link to NCBI )
Experiment Title Illumina HiSeq 1500 paired end sequencing; Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name Sample 11_p
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_1500
   
SRA Experiment Id ERX3013243  (Link to NCBI )
Experiment Title Illumina HiSeq 1500 paired end sequencing; Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name Sample 10_p
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_1500
   
SRA Experiment Id ERX3013242  (Link to NCBI )
Experiment Title Illumina HiSeq 1500 paired end sequencing; Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name Sample 8_p
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_1500
   
SRA Experiment Id ERX3013241  (Link to NCBI )
Experiment Title Illumina HiSeq 1500 paired end sequencing; Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name Sample 7_p
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_1500
   
SRA Experiment Id ERX3013240  (Link to NCBI )
Experiment Title Illumina HiSeq 1500 paired end sequencing; Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name Sample 6_p
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_1500
   
SRA Experiment Id ERX3013250  (Link to NCBI )
Experiment Title Illumina HiSeq 1500 paired end sequencing; Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name Sample 9_p
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_1500
Study Abstract Two-stage two-phase biogas reactor systems consisting each of one batch downflow hydrolysis reactor (HR, vol. 10 L), one process fluid storage tank (vol. 10 L), and one downstream upflow anaerobic filter reactor (AF, vol. 10 L), were operated at mesophilic (M, 37 °C) and thermophilic (T, 55 °C) temperatures and over a period of > 750 d (Figure 1, Additional file 1). For each reactor system and for each process temperature, two replicates were conducted in parallel, denominated further as biological replicates. Further process details were as previously published. Start-up of all fermenters were performed using liquid fermenter material from a biogas plant converting cattle manure in co-digestion with grass and maize silage and other biomass at varying concentrations and at mesophilic temperatures. Silage of perennial ryegrass (Lolium perenne L.) was digested as sole substrate in batches of varying amounts with retention times of 28 d (storage of bale silage at -20 °C, cutting length 3 cm, volatile substances (VS) 32 % of fresh mass (FM), total Kjeldahl nitrogen 7.6 g kgFM-1, NH4+-N 0.7 g kgFM-1, acetic acid 2.6 g kgFM-1, propionic acid < 0.04 g kgFM-1, lactic acid 2.6 g kgFM-1, ethanol 2.2 g kgFM-1, C/N ratio 19.3, chemical oxygen demand (COD) 357.7 g kgFM-1, analysis of chemical properties according to [6]. No spoilage was observed in the silage. Biogas yields were calculated as liters normalized to 0 °C and 1013 hPa (LN) per kilogram volatile substances (kgVS). For chemical analysis, samples were taken from the effluents of HR and AF. For sequencing of 16S rRNA gene amplicon libraries, microbial metagenomes, and microbial metatranscriptomes, samples were taken from the silage digestate in the HR digested for 2 d. At this time point, high AD rates were detected as indicated by the fast increase of volatile fatty acids (VFA), e.g., acetic acid. Sampling was performed at two different organic loading rates (OLR), i.e., batch-fermentation of 500 g (denominated as “low OLR”, samples MOLR500 and TOLR500) and 1,500 g silage (denominated as “increased OLR”, samples MOLR1500 and TOLR1500).
Alias E-MTAB-7533
External Id BioProject=PRJEB30432