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SRA STUDY
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SRA Study Id
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ERP110008
(Link to NCBI )
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Study Title
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De novo whole genome sequencing of the mainland tiger snake, Notechis scutatus
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SRA Experiments
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| SRA Experiment Id |
ERX2728433
(Link to NCBI ) |
| Experiment Title |
HiSeq X Ten paired end sequencing; Mainland tiger snake whole genome sequencing - Illumina sequencing |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
170814_FR07936202 |
| Library Layout |
PAIRED |
| Library Instrument |
HI_SEQ_X_TEN |
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Study Abstract
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The mainland tiger snake, Notechis scutatus, is a venomous snake species found in Australia. We have performed whole genome sequencing and de novo assembly of the mainland tiger snake, using 10x Chromium linked reads. Supernova v2 assembly of the data generated a 1.67 Gb draft genome with a maximum scaffold size of 50.9 Mb, primary scaffold N50 of 6.00 Mb (4.84% gaps) and a primary scaffold BUSCO (v2.0.1 short) completeness estimate of 87.3%. Pseudodiploid processing of the assembly generated non-redundant alternative scaffolds for 1.26 Gb (75.6%) of the assembly, with an N50 of 8.50 Mb (5.20% gaps).
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Alias
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ena-STUDY-UNIVERSITY OF NEW SOUTH WALES-22-07-2018-10:45:31:559-607
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External Id
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BioProject=PRJEB27871
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