|
SRA STUDY
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SRA Study Id
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ERP109193
(Link to NCBI )
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Study Title
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Enhanced annotation of microbiomes and their genetic repertoires implicated in anaerobic digestions for the generation of biogas
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SRA Experiments
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| SRA Experiment Id |
ERX2687810
(Link to NCBI ) |
| Experiment Title |
Illumina HiSeq 2500 paired end sequencing |
| Exp Library Strategy |
RNA_SEQ |
| Library Source |
METATRANSCRIPTOMIC |
| Library Selection |
Inverse rRNA |
| Library Name |
Bgp7 RNA |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2500 |
| |
|
| SRA Experiment Id |
ERX2690666
(Link to NCBI ) |
| Experiment Title |
MinION sequencing |
| Exp Library Strategy |
WGS |
| Library Source |
METAGENOMIC |
| Library Selection |
unspecified |
| Library Name |
Bgp4 ONT |
| Library Layout |
SINGLE |
| Library Instrument |
MIN_ION |
| |
|
| SRA Experiment Id |
ERX2687808
(Link to NCBI ) |
| Experiment Title |
Illumina HiSeq 2500 paired end sequencing |
| Exp Library Strategy |
RNA_SEQ |
| Library Source |
METATRANSCRIPTOMIC |
| Library Selection |
Inverse rRNA |
| Library Name |
Bgp2 RNA |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2500 |
| |
|
| SRA Experiment Id |
ERX2690663
(Link to NCBI ) |
| Experiment Title |
MinION sequencing |
| Exp Library Strategy |
WGS |
| Library Source |
METAGENOMIC |
| Library Selection |
unspecified |
| Library Name |
Bgp1 ONT |
| Library Layout |
SINGLE |
| Library Instrument |
MIN_ION |
| |
|
| SRA Experiment Id |
ERX2687809
(Link to NCBI ) |
| Experiment Title |
Illumina HiSeq 2500 paired end sequencing |
| Exp Library Strategy |
RNA_SEQ |
| Library Source |
METATRANSCRIPTOMIC |
| Library Selection |
Inverse rRNA |
| Library Name |
Bgp3 RNA |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2500 |
| |
|
| SRA Experiment Id |
ERX2690665
(Link to NCBI ) |
| Experiment Title |
MinION sequencing |
| Exp Library Strategy |
WGS |
| Library Source |
METAGENOMIC |
| Library Selection |
unspecified |
| Library Name |
Bgp3 ONT |
| Library Layout |
SINGLE |
| Library Instrument |
MIN_ION |
| |
|
| SRA Experiment Id |
ERX2690664
(Link to NCBI ) |
| Experiment Title |
MinION sequencing |
| Exp Library Strategy |
WGS |
| Library Source |
METAGENOMIC |
| Library Selection |
unspecified |
| Library Name |
Bgp2 ONT |
| Library Layout |
SINGLE |
| Library Instrument |
MIN_ION |
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Study Abstract
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A Biogas Metagenomics Hybrid Assembly (BioMETHA) database,specific for the microbiome of biogas plants, was generated using a dedicatedassembly strategy for the metagenomic datasets. Long reads from nanoporesequencing (MinION) were combined with short, more accurate secondgeneration sequencing reads (Illumina HiSeq). Binning following assembly resulted in 231 genomic bins with an average completeness of 47%. Functional annotation identified roughly 207k genes, specific for biogas plant microbiomes. BioMETHA allows mapping of up to 73% of DNA samples derived from various biogas plants.
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Alias
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ena-STUDY-FRAUNHOFER IGB-05-06-2018-11:44:14:063-3579
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External Id
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BioProject=PRJEB27149
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