SRA EXPERIMENT
SRA Experiment Id ERX1821202  (Link to NCBI )
Experiment Title Illumina HiSeq 2000 sequencing; qiita_ptid_74:638.VAN45.120210.2
SRA Study
SRA Study Id ERP020508  (Link to NCBI )
Study Title Protist diversity in a permanently ice-covered Antarctic Lake during the polar night transition
Study Abstract The McMurdo Dry Valleys of Antarctica harbor numerous permanently ice-covered lakes, which provide a year-round oasis for microbial life. Microbial eukaryotes in these lakes occupy a variety of trophic levels within the simple aquatic food web ranging from primary producers to tertiary predators. Here, we report the first molecular study to describe the vertical distribution of the eukaryotic community residing in the photic zone of the east lobe (ELB) and west lobe (WLB) of the chemically stratified Lake Bonney. The 18S ribosomal RNA (rRNA) libraries revealed vertically stratified populations dominated by photosynthetic protists, with a cryptophyte dominating shallow populations (ELB-6m; WLB-10m), a haptophyte occupying mid-depths (both lobes 13m) and chlorophytes residing in the deepest layers (ELB-18 and 20m; WLB-15 and 20m) of the photic zone. A previously undetected stramenopile occurred throughout the water column of both lobes. Temporal variation in the eukaryotic populations was examined during the transition from Antarctic summer (24-h sunlight) to polar night (complete dark). Protist diversity was similar between the two lobes of Lake Bonney due to exchange between the photic zones of the two basins via a narrow bedrock sill. However, vertical and temporal variation in protist distribution occurred, indicating the influence of the unique water chemistry on the biology of the two dry valley watersheds.
Alias qiita_sid_638
External Id BioProject=PRJEB18567
SRA Sample
SRA Sample Id ERS1471432  (Link to NCBI )
Title qiita_sid_638:638.VAN45.120210.2
SRA Run
SRA Run Id ERR1753835  (Link to NCBI )
Spots 450878
Bases 43930591
Size 38744909
Published Date 2016-12-23
Exp Library Strategy OTHER
Library Source METAGENOMIC
Library Selection PCR
Library Name 638.VAN45.120210.2
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2000
Exp. Description
Spot Length