PROJECT INFORMATION
GOLD Project ID
Gp0307781  
Project Name
Pongo abelii Susie  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Pongo abelii Susie genome sequencing
NCBI BioProject ID 369439
NCBI BioProject Accession PRJNA369439
NCBI Locus Tag
  
NCBI BioSample Accession SAMN06275555
PI
Added By JGI automated process on 2018-04-26
Last Modified By JGI automated process on 2018-06-06
Project Comments
  
Project Status
Complete and Published  
Project Relevance Evolution
Sequencing Center University of Washington (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Pongo abelii Susie genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2542218
Experiment Title WGS_Pongo_abelii_cell_line: Sample SusiePPY.6_75kb.SS
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name SusiePPY.6_75kb.SS
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX2542217
Experiment Title WGS_Pongo_abelii_cell_line: Sample SusiePPY.5_45kb.SS
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name SusiePPY.5_45kb.SS
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX2542216
Experiment Title WGS_Pongo_abelii_cell_line: Sample SusiePPY.4_75kb.SS
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name SusiePPY.4_75kb.SS
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX2542215
Experiment Title WGS_Pongo_abelii_cell_line: Sample SusiePPY.3_75kb.SS
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name SusiePPY.3_75kb.SS
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX2542214
Experiment Title WGS_Pongo_abelii_cell_line: Sample SusiePPY.2_45kb.SS
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name SusiePPY.2_45kb.SS
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX2542213
Experiment Title WGS_Pongo_abelii_cell_line: Sample SusiePPY.1_45kb.SS
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name SusiePPY.1_45kb.SS
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3180079
Experiment Title orang ips
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAB_Ilumina
Library Layout PAIRED
Library Instrument NEXT_SEQ_500
PROJECT COMPOSITION
Study Pongo abelii Susie genome sequencing
Organism Pongo abelii Susie
Analysis Projects Pongo abelii Susie
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina NextSeq 500
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0414721
Organism Name
Pongo abelii Susie  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
CHORDATA  
Genus
Pongo  
Genus Synonyms
  
Species
Pongo abelii  
Subspecies
  
Species Synonyms
  
Strain
Susie  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 9601
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Metazoa  
NCBI Phylum
Chordata  
NCBI Class
Mammalia  
NCBI Order
Primates  
NCBI Family
Hominidae  
NCBI Genus
Pongo  
NCBI Species
Pongo abelii  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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