Studies
|
62,117 |
|
Biosamples
|
212,458 |
| Organisms | 520,878 |
|
Sequencing Projects
|
583,418 |
|
Analysis Projects
|
436,662 |
| PROJECT INFORMATION | |||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GOLD Project ID |
Gp0070108
|
||||||||||||||||||||
|
Project Name
|
Staphylococcus aureus VE08/02242ST1
|
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|
Other Names
|
|
||||||||||||||||||||
|
Legacy ER Project ID
|
61709
|
||||||||||||||||||||
|
Legacy GOLD ID
|
Gi0061709
|
||||||||||||||||||||
| NCBI BioProject Name | Staphylococcus aureus VE08/02242ST1 | ||||||||||||||||||||
|
NCBI BioProject Accession
|
PRJNA226403 |
||||||||||||||||||||
|
NCBI Locus Tag
|
V010
|
||||||||||||||||||||
|
NCBI BioSample Accession
|
SAMN02391277 |
||||||||||||||||||||
|
Source Sample ID
|
|
||||||||||||||||||||
| PI | Unknown | ||||||||||||||||||||
| Added By | JGI automated process on 2013-12-04 | ||||||||||||||||||||
| Last Modified By | Supratim Mukherjee on 2017-03-29 | ||||||||||||||||||||
| Project Comments |
|
||||||||||||||||||||
|
Project Status
|
Permanent Draft
|
||||||||||||||||||||
|
Project Relevance
|
Medical |
||||||||||||||||||||
|
Sequencing Center
|
Broad Institute
(USA)
[ROR ID]
|
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|
Collaborating Institute
|
|
||||||||||||||||||||
|
Funding Agency
|
|
||||||||||||||||||||
|
Project Description
|
MRSA ST398
|
||||||||||||||||||||
| Is JGI Project |
No
|
||||||||||||||||||||
|
Project Information Visibility
|
Public | ||||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||||
|
Specimen
|
Organism |
||||||||||||||||||||
|
Sequencing Strategy
|
Whole Genome Sequencing
|
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|
Nucleic Acid
|
DNA |
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||||
|
JGI Data Utilization Status
|
|
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|
JGI Award DOI
|
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|
Genome Publications
|
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Other Publications
|
|
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Ignored Publications
|
|
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Unassigned Publications
|
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| SRA Experiment |
|
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| PROJECT COMPOSITION | |||||||||||||||||||||
| Study |
Broad institute Methicillin-resistant Staphylococcus aureus livestock-associated MRSA ST398 |
||||||||||||||||||||
| Organism |
Staphylococcus aureus VE08/02242ST1 |
||||||||||||||||||||
| Analysis Projects |
Staphylococcus aureus VE08/02242ST1 |
||||||||||||||||||||
| Number of Analysis Projects (AP) |
1 |
||||||||||||||||||||
| Number of Derived Analyis Projects (DAP) |
0
|
||||||||||||||||||||
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality |
|
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
| Sequencing Comments |
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
|
Illumina |
|
Library Method
|
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
33
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0070108 |
| Organism Name |
Staphylococcus aureus VE08/02242ST1
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
BACILLOTA
|
| Genus |
Staphylococcus
|
| Genus Synonyms |
|
| Species |
Staphylococcus aureus
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
VE08/02242ST1
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
|
| Type Strain |
Unknown
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
| ORGANISM TAXONOMY | |
| NCBI Taxonomy ID |
1413450 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
Bacillati
|
| NCBI Phylum |
Bacillota
|
| NCBI Class |
Bacilli
|
| NCBI Order |
Bacillales
|
| NCBI Family |
Staphylococcaceae
|
| NCBI Genus |
Staphylococcus
|
| NCBI Species |
Staphylococcus aureus
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
|
| Ecosystem Category |
|
| Ecosystem Type |
|
| Ecosystem Subtype |
|
| Specific Ecosystem |
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
|
| Motility |
|
| Sporulation |
|
| Temperature Range |
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram+
|
| Biotic Relationships |
|
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
|
| Known Habitats |
|
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
|
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