PROJECT INFORMATION
GOLD Project ID
Gp0009104  
Project Name
Porphyra umbilicalis  
Other Names
  
Legacy ER Project ID
18343  
Legacy GOLD ID
Gi08393  
NCBI BioProject Name Porphyra umbilicalis
NCBI BioProject ID 234409
NCBI BioProject Accession PRJNA234409
NCBI Locus Tag
BU14  
NCBI BioSample Accession SAMN00118171
PI Susan Brawley
Added By Nikos Kyrpides on 2010-11-16
Last Modified By JGI automated process on 2019-04-29
Project Comments
  
Project Status
incomplete  
Project Relevance Biotechnological
Bioremediation
ALGAE
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Proceedings of the National Academy of Sciences of the United States of America 114(31):E6361-E6370 (Bangiophyceae, Rhodophyta).

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1950863  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GSFZ
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX1950862  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GSFZ
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX1950865  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GSFZ
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX1950864  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GSFZ
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX1950867  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GSFZ
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX1950866  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GSFZ
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX1950869  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name HXPC
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_I_IX
 
SRA Experiment Id SRX1950868  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GSFZ
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX1950861  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GSFZ
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX1950860  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GSFZ
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX1950859  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GSFZ
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX1871200  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PNWN
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX030435  (Link to NCBI )
Experiment Title Porphyra umbilicalis library
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GWPO
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX030436  (Link to NCBI )
Experiment Title Porphyra umbilicalis library
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GWPN
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX1950854  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GWPO
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX030434  (Link to NCBI )
Experiment Title Porphyra umbilicalis library
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GWPN
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX1950856  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GSFZ
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX1950855  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GWPO
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX1950858  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GSFZ
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX030437  (Link to NCBI )
Experiment Title Porphyra umbilicalis library
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GSFZ
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX1950857  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GSFZ
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX1950844  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GWPO
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX1950838  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GWPO
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX1950837  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GWPO
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX1950839  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GWPO
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX1950830  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GWPN
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX2043294  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043293  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1950832  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GWPN
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX2043292  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1950831  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GWPN
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX2043291  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1950834  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GWPN
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX2043290  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1950833  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GWPN
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX1950836  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GWPO
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX1950835  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GWPO
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX2043335  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043334  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043333  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043332  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043299  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043298  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043331  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043330  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043297  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043296  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043295  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043329  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043328  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043327  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043326  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043325  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1950829  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GWPN
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX1950828  (Link to NCBI )
Experiment Title Porphyra umbilicalis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GWPN
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX037698  (Link to NCBI )
Experiment Title Porphyra umbilicalis library
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GWPO
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX2043283  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043282  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043281  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043280  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043324  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043323  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043289  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043322  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043321  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043288  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043287  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043320  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043286  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043285  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043284  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043319  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043318  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043317  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043316  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043315  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043314  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX030431  (Link to NCBI )
Experiment Title Porphyra umbilicalis library
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GSFZ
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX2043313  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043279  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043312  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043311  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043278  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name WNSN
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX2043277  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name YCGA
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX2043310  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043309  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043308  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043307  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043306  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043305  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1871199  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name CZBA
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX2043304  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1871198  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name UBBC
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX2043303  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043302  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043301  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2043300  (Link to NCBI )
Experiment Title Porphyra umbilicalis Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ACWYN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
PROJECT COMPOSITION
Study Genome and metagenome analysis of marine red algae Porphyra
Organism Porphyra umbilicalis
Analysis Projects Porphyra umbilicalis
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX Titanium
PacBio RS
Illumina HiSeq 2500-Rapid
Illumina HiSeq 2500
Illumina HiSeq 2000
PacBio RS II
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0009104
Organism Name
Porphyra umbilicalis  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
PROTISTS-RHODOPHYTA  
Genus
Porphyra  
Genus Synonyms
  
Species
Porphyra umbilicalis  
Subspecies
  
Species Synonyms
  
Strain
  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2786
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
  
NCBI Phylum
Rhodophyta  
NCBI Class
Bangiophyceae  
NCBI Order
Bangiales  
NCBI Family
Bangiaceae  
NCBI Genus
Porphyra  
NCBI Species
Porphyra umbilicalis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Intertidal zone  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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