PROJECT NAME
GOLD Project ID
Gp0000098  
Project Name
Populus balsamifera trichocarpa  
Other Names
  
Legacy ER Project ID
10077  
Legacy GOLD ID
Gc00608, Gi0010077  
NCBI BioProject Name Populus trichocarpa
NCBI BioProject ID 10772
NCBI BioProject Accession
PRJNA10772  
NCBI Locus Tag
POPTR  
NCBI BioSample Accession
SAMN02953657  
PI Jerry A Tuskan
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jakob Jansson on 2010-08-03
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Agricultural
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Genome Canada (Canada)
Collaborating Institute Oak Ridge National Laboratory (USA)
University of Washington (USA)
Swedish University of Agricultural Sciences (Sweden)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genome sequencing of Populus trichocarpa, first tree genome to be sequenced  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Wikipedia
Taxonomy
Entrez
Database
  
Genome Publications "Science (New York, N.Y.)" The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
Other Publications
  
PROJECT COMPOSITION
Studies Populus balsamifera trichocarpa
Analysis Projects Populus balsamifera trichocarpa
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
7.6 million end-reads  
Read Size
  
Vector
  
GC Percent
34  
Chromosome Count
19  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000098
Organism Name
Populus balsamifera trichocarpa  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
PLANTS-STREPTOPHYTA  
Genus
Populus  
Genus Synonyms
  
Species
Populus balsamifera   
Subspecies
trichocarpa  
Species Synonyms
  
Strain
  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 3694
NCBI Kingdom
Viridiplantae  
NCBI Phylum
Streptophyta  
NCBI Class
  
NCBI Order
Malpighiales  
NCBI Family
Salicaceae  
NCBI Genus
Populus  
NCBI Species
Populus trichocarpa  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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