PROJECT NAME
GOLD Project ID
Gp0000055  
Project Name
Candidatus Nitrosocaldus yellowstonii HL72  
Other Names
  
Legacy ER Project ID
644  
Legacy GOLD ID
Gi0000644  
NCBI BioProject Name
  
NCBI BioProject ID
  
NCBI BioProject Accession
  
NCBI Locus Tag
Nyel  
NCBI BioSample Accession
  
PI Jose R. de la Torre
Added By Jose R. de la Torre on 2010-03-23
Last Modified By Jose R. de la Torre on 2014-01-17
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
incomplete  
Project Relevance
  
Sequencing Center
  
Collaborating Institute San Francisco State University (USA)
Funding Agency
  
Project Description
Deep-branching thermophilic ammonia-oxidizing archaeon  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Nitrosocaldus yellowstonii HL72
Analysis Projects
  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Illumina
Library Method (MIGS-28)
454-Paired-end  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
37  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000055
Organism Name
Candidatus Nitrosocaldus yellowstonii HL72  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
CRENARCHAEOTA  
Genus
Candidatus Nitrosocaldus  
Genus Synonyms
  
Species
Candidatus Nitrosocaldus yellowstonii  
Subspecies
  
Species Synonyms
  
Strain
HL72  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1268556
NCBI Kingdom
  
NCBI Phylum
Crenarchaeota  
NCBI Class
  
NCBI Order
  
NCBI Family
  
NCBI Genus
Candidatus Nitrosocaldus  
NCBI Species
Candidatus Nitrosocaldus yellowstonii  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Thermal springs  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Coccus-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Thermophile  
Temperature Optimum
72  
Salinity
  
pH
8  
Cell Diameter
0.5  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases
  
Known Habitats Hot spring
Sediment
Metabolisms Ammonia-oxidizer
Carbon fixation
Nitrifying
Phenotypes Neutrophilic
Nitrogen cycle
Small
Energy Sources Chemolithoautotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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