PROJECT NAME
GOLD Project ID
Gp0000021  
Project Name
Herpetosiphon aurantiacus DSM 785  
Other Names
  
Legacy ER Project ID
10008  
Legacy GOLD ID
Gi00947, Gc00677  
NCBI BioProject Name Herpetosiphon aurantiacus ATCC 23779
NCBI BioProject ID 16523
NCBI BioProject Accession
PRJNA16523  
NCBI Locus Tag
Haur  
NCBI BioSample Accession
SAMN00623048  
PI Donald A. Bryant
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Comparative analysis
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Filamentous soil, water, and sewage bacterium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Isolation
Database
  
Genome Publications 22675585
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Chloroflexi, 7 species
Analysis Projects Herpetosiphon aurantiacus DSM 785
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
51  
Chromosome Count
1  
Plasmid Count
2  
ORGANISM NAME
GOLD Organism ID Go0000021
Organism Name
Herpetosiphon aurantiacus DSM 785  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CHLOROFLEXI  
Genus
Herpetosiphon  
Genus Synonyms
  
Species
Herpetosiphon aurantiacus  
Subspecies
  
Species Synonyms
  
Strain
DSM 785  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 785  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.569  
Exemplar Name
Herpetosiphon aurantiacus  
Taxon DOI
10.1601/tx.569  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 316274
NCBI Kingdom
  
NCBI Phylum
Chloroflexi  
NCBI Class
Chloroflexia  
NCBI Order
Herpetosiphonales  
NCBI Family
Herpetosiphonaceae  
NCBI Genus
Herpetosiphon  
NCBI Species
Herpetosiphon aurantiacus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Lentic  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 125696
Genbank 16S ID M34117
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Filament-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
30  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Fresh water
Hot spring
Metabolisms
  
Phenotypes
  
Energy Sources Chemoorganoheterotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?