PROJECT INFORMATION
GOLD Project ID
Gp0014287  
Project Name
Bradyrhizobium sp. Th.b2  
Other Names
  
Legacy ER Project ID
21233  
Legacy GOLD ID
Gi12092  
NCBI BioProject Name Bradyrhizobium sp. th.b2
NCBI BioProject ID 195826
NCBI BioProject Accession PRJNA195826
NCBI Locus Tag
K359  
NCBI BioSample Accession SAMN02441514
PI Nikos Kyrpides
Added By Nikos Kyrpides on 2012-01-25
Last Modified By JGI automated process on 2019-04-29
Project Comments
High-quality permanent draft genome sequence of Bradyrhizobium sp. Th.b2, a microsymbiont of Amphicarpaea bracteata collected in Johnson City, New York  
Project Status
Permanent Draft  
Project Relevance Root Nodulating Bacteria (RNB)
GEBA-RNB
Agricultural
Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Murdoch University (Australia)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
The Genomic Encyclopedia of Bacteria and Archaea (GEBA) initiative aims to sequence genomes to fill phylogenetic gaps. GEBA-RNB focuses on Root Nodulating Bacteria, which form symbioses with legumes after infection of root hairs. It aims to sequence 100 RNB strains from world-wide locations, to study bio-geographical effects on species evolution and mechanisms of symbiotic nitrogen fixation (SNF). SNF enhances the environmental sustainability of agriculture by increasing soil fertility and productivity, thus reducing the need for nitrogenous fertilizer.  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Standards in genomic sciences High-quality permanent draft genome sequence of Bradyrhizobium sp. Th.b2, a microsymbiont of Amphicarpaea bracteata collected in Johnson City, New York.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study GEBA - Root Nodulating Bacteria
Organism Bradyrhizobium sp. th.b2
Analysis Projects Bradyrhizobium sp. Th.b2
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX Titanium
Illumina
Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Number Of Reads
20,348,156  
Read Size
2x150 bp  
Vector
  
GC Percent
63  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0014287
Organism Name
Bradyrhizobium sp. th.b2  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Bradyrhizobium  
Genus Synonyms
  
Species
Bradyrhizobium sp. th.b2  
Subspecies
  
Species Synonyms
  
Strain
th.b2  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 172088
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Bradyrhizobiaceae  
NCBI Genus
Bradyrhizobium  
NCBI Species
Bradyrhizobium sp. th.b2  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Rhizosphere  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Symbiotic
Symbiotic Physical Interaction
Endosymbiotic intracellular  
Symbiotic Relationship
Mutualistic  
Symbiont Name
Glycine max  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Root nodule
Soil
Host
Plant root
Metabolisms Nitrogen fixation
Phenotypes Non-Pathogen
Energy Sources
  

 

 

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