PROJECT INFORMATION
GOLD Project ID
Gp0653145  
Project Name
Xanthomonas arboricola pv. pruni Xcp1  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Xanthomonas arboricola pv. pruni Xcp1
NCBI BioProject Accession PRJNA796325
NCBI Locus Tag
L1B16  
NCBI BioSample Accession SAMN24847855
PI
Added By JGI automated process on 2022-06-29
Last Modified By JGI automated process on 2022-07-05
Project Comments
  
Project Status
Complete and Published  
Project Relevance Agricultural
Sequencing Center North Carolina State University (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Xanthomonas arboricola pv. pruni Xcp1 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX13731837  (Link to NCBI )
Experiment Title DNA sequencing of Xcp1
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Xcp1_Illumina
Library Layout PAIRED
Library Instrument NEXT_SEQ_2000
 
SRA Experiment Id SRX13731838  (Link to NCBI )
Experiment Title DNA sequencing of Xcp1
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Xcp1_pacBio
Library Layout SINGLE
Library Instrument SEQUEL
PROJECT COMPOSITION
Study Xanthomonas arboricola pv. pruni Xcp1 genome sequencing
Organism Xanthomonas arboricola pv. pruni Xcp1
Analysis Projects Xanthomonas arboricola pv. pruni Xcp1
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina; PacBio
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0635642
Organism Name
Xanthomonas arboricola pv. pruni Xcp1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Xanthomonas  
Genus Synonyms
  
Species
Xanthomonas arboricola  
Subspecies
  
Species Synonyms
  
Strain
Xcp1  
Strain Synonyms
  
Serovar/Cultivar
pruni Xcp1  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 69929
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Xanthomonadales  
NCBI Family
Xanthomonadaceae  
NCBI Genus
Xanthomonas  
NCBI Species
Xanthomonas arboricola  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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