PROJECT INFORMATION
GOLD Project ID
Gp0652552  
Project Name
Desulfovibrio desulfuricans DFI.2.30  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Duchossois Family Institute Symbiotic Strain Bank
NCBI BioProject Accession PRJNA737800
NCBI Locus Tag
LIZ33  
NCBI BioSample Accession SAMN22167590
Source Sample ID
PI Unknown
Added By JGI automated process on 2022-06-29
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Medical
Sequencing Center University of Chicago (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Desulfovibrio desulfuricans DFI.2.30 genome sequencing from a collection of gut derived symbiotic bacterial strains cultured from healthy donors  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study A collection of gut derived symbiotic bacterial strains cultured from healthy donors
Organism Desulfovibrio desulfuricans DFI.2.30
Analysis Projects Desulfovibrio desulfuricans DFI.2.30
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0635185
Organism Name
Desulfovibrio desulfuricans DFI.2.30  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-DELTA  
Genus
Desulfovibrio  
Genus Synonyms
  
Species
Desulfovibrio desulfuricans  
Subspecies
  
Species Synonyms
  
Strain
DFI.2.30  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 876
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Thermodesulfobacteriota  
NCBI Class
Desulfovibrionia  
NCBI Order
Desulfovibrionales  
NCBI Family
Desulfovibrionaceae  
NCBI Genus
Desulfovibrio  
NCBI Species
Desulfovibrio desulfuricans  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals: Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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