Studies
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52,460 |
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Biosamples
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170,231 |
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Sequencing Projects
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472,495 |
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Analysis Projects
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360,348 |
| Organisms | 460,370 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0643987
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Project Name
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Rhodomonas salina CCAP 978/27 Transcriptome - CCAP978/27 Pool1
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name |
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NCBI BioProject Accession
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NCBI Locus Tag
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NCBI BioSample Accession
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| PI | Jeffry L. Dudycha |
| Added By |
JGI automated process
on 2022-05-06 |
| Last Modified By |
JGI automated process
on 2022-05-06 |
| Project Comments |
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Project Status
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incomplete
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Project Relevance
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
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Rhodomonas salina CCAP 978/27 Transcriptome; sample is from 400mL of total cryptophyte culture, where 100mL came from cultures grown in wide-spectrum, 100mL came from red light, 100mL from blue light, and 100mL from green light. These cultures were then pooled to create one sample for combined transcriptome assembly. All light environments were kept at 30um photons/m^2/s.
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| Is JGI Project |
Yes
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Project Information Visibility
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Public |
| PROJECT TYPE | |
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Specimen
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Organism |
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Nucleic Acid
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RNA |
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Sequencing Strategy
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Transcriptome
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| EXTERNAL PROJECT LINKS | |
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JGI Data Utilization Status
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Restricted
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JGI Award DOI
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10.46936/10.25585/60001089 |
| JGI Portal Download | Raw Sequence Data |
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Genome and Transcriptome sequencing to study the photosynthetic diversity of cryptophyte algae |
| Organism |
Rhodomonas salina CCAP 978/27 |
| Analysis Projects |
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| Number of Analysis Projects (AP) |
0 |
| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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In progress |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina NovaSeq S4 |
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Library Method
(MIGS-28)
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Illumina RNASeq w/PolyA Selection, Tubes
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Library Layout
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Library Screening Method
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Number Of Reads
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Vector
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0587233 |
| Organism Name |
Rhodomonas salina CCAP 978/27
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
EUKARYAL
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| Phylogeny |
PROTISTS-CRYPTOPHYTA
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| Genus |
Rhodomonas
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| Genus Synonyms |
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| Species |
Rhodomonas salina
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| Subspecies |
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| Species Synonyms |
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| Strain |
CCAP 978/27
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
52970 |
| NCBI Superkingdom |
Eukaryota
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| NCBI Kingdom |
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| NCBI Phylum |
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| NCBI Class |
Cryptophyceae
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| NCBI Order |
Pyrenomonadales
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| NCBI Family |
Pyrenomonadaceae
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| NCBI Genus |
Rhodomonas
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| NCBI Species |
Rhodomonas salina
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
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| Ecosystem Category |
Aquatic
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| Ecosystem Type |
Freshwater
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| Ecosystem Subtype |
Unclassified
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| Specific Ecosystem |
Unclassified
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
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| Oxygen Requirement |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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