PROJECT INFORMATION
GOLD Project ID
Gp0643260  
Project Name
Metatranscriptome of rhizosphere microbial communities from fir plant in Hohenlockstedt, Germany - R-3T  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Microbial communities in Abies nordmanniana
NCBI BioProject Accession PRJNA515250
NCBI Locus Tag
  
NCBI BioSample Accession SAMN10747880
PI
Added By JGI automated process on 2022-05-02
Last Modified By Supratim Mukherjee on 2022-05-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center University of Copenhagen (Denmark)
Collaborating Institute
  
Funding Agency
  
Project Description
Metatranscriptome of rhizosphere microbial communities from fir plant in Hohenlockstedt, Germany  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX5262263  (Link to NCBI )
Experiment Title 16S RNA bacteria
Exp Library Strategy RNA_SEQ
Library Source METAGENOMIC
Library Selection cDNA
Library Name R-3T
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Soil microbial communities from Hohenlockstedt, Germany
Biosample Metatranscriptome of rhizosphere microbial communities from fir plant in Hohenlockstedt, Germany - R-3T
Analysis Projects Metatranscriptome of rhizosphere microbial communities from fir plant in Hohenlockstedt, Germany - R-3T
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Metatranscriptome of rhizosphere microbial communities from fir plant in Hohenlockstedt, Germany - R-3T
Other Names (alias, synonyms, short names)
  
Sample Description
Metatranscriptome of rhizosphere microbial communities from fir plant in Hohenlockstedt, Germany  
SAMPLE TAXONOMY
NCBI Taxonomy ID 939928
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Roots  
Ecosystem Subtype
Rhizosphere  
Specific Ecosystem
  

 

 

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