PROJECT INFORMATION
GOLD Project ID
Gp0642696  
Project Name
Metatranscriptome of rhizosphere soil fungal communities from apple tree from orchard in Shaanxi, China - XQ  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name The rhizospheric soil samples from healthy and diseased apple trees in replanted orchards
NCBI BioProject Accession PRJNA780338
NCBI Locus Tag
  
NCBI BioSample Accession SAMN23138510
PI
Added By JGI automated process on 2022-05-02
Last Modified By Supratim Mukherjee on 2022-05-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Shandong Agricultural University
Collaborating Institute
  
Funding Agency
  
Project Description
Metatranscriptome of rhizosphere soil fungal communities from apple tree from orchard in Shaanxi, China  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX13136573  (Link to NCBI )
Experiment Title XQ3
Exp Library Strategy RNA_SEQ
Library Source METAGENOMIC
Library Selection PCR
Library Name 63
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id SRX13136572  (Link to NCBI )
Experiment Title XQ2
Exp Library Strategy RNA_SEQ
Library Source METAGENOMIC
Library Selection PCR
Library Name 62
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id SRX13136571  (Link to NCBI )
Experiment Title XQ1
Exp Library Strategy RNA_SEQ
Library Source METAGENOMIC
Library Selection PCR
Library Name 61
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Rhizosphere soil fungal communities from apple trees from orchards in various locations China
Biosample Rhizosphere soil fungal communities from apple tree from orchard in Shaanxi, China - XQ
Analysis Projects Metatranscriptome of rhizosphere soil fungal communities from apple tree from orchard in Shaanxi, China - XQ
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Rhizosphere soil fungal communities from apple tree from orchard in Shaanxi, China - XQ
Other Names (alias, synonyms, short names)
  
Sample Description
Rhizosphere soil fungal communities from apple tree from orchard in Shaanxi, China  
SAMPLE TAXONOMY
NCBI Taxonomy ID 410658
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Roots  
Ecosystem Subtype
Rhizosphere  
Specific Ecosystem
Soil  

 

 

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