PROJECT INFORMATION | |
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GOLD Project ID
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Gp0596676
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Project Name
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Biofilm microbial communities from seawater aquarium denitrification system in Montreal, Quebec, Canada - AucOB
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Other Names
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AucOB
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Legacy GOLD ID
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NCBI BioProject Name |
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NCBI BioProject Accession
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NCBI Locus Tag
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NCBI BioSample Accession
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Source Sample ID
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PI | Richard Villemur |
Added By | Richard Villemur on 2021-12-10 |
Last Modified By | Richard Villemur on 2021-12-17 |
Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Biodegradation of pollutants |
Sequencing Center
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Genome Quebec
(Canada)
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Collaborating Institute
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Funding Agency
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Project Description
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Is JGI Project |
No
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Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Biome |
Nucleic Acid
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RNA |
Sequencing Strategy
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Metatranscriptome
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EXTERNAL PROJECT LINKS | |
JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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SRA Experiment |
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PROJECT COMPOSITION | |
Study |
Biofilm microbial communities of laboratory-scale, methanol-fed denitrifying cultures |
Biosample |
Biofilm microbial communities from seawater aquarium denitrification system in Montreal, Quebec, Canada - AucOB |
Analysis Projects |
Biofilm microbial communities from seawater aquarium denitrification system in Montreal, Quebec, Canada - AucOB |
Number of Analysis Projects (AP) |
1 |
Number of Derived Analyis Projects (DAP) |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 3: Improved-High-Quality Draft |
Finishing Goal
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Level 4: Annotation Directed |
Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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rRNA-depleted RNA; RNA seq by Illumina; aligned on three genomes; unaligned were assembly de novo by Trinity; Assembled transcripts were quantified by RSEM
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina NovaSeq |
Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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GC Percent |
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Chromosome Count |
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Plasmid Count |
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SAMPLE NAME | |
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Sample Name |
Biofilm microbial communities from seawater aquarium denitrification system in Montreal, Quebec, Canada - AucOB |
Other Names (alias, synonyms, short names) |
AucOB
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Sample Description |
Biofilm taken from a fluidized-bed, methanol-fed denitrification system treating seawater and preserved at -70C for 14 years
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SAMPLE TAXONOMY | |
NCBI Taxonomy ID |
718308 |
GOLD CLASSIFICATION | |
Ecosystem |
Engineered
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Ecosystem Category |
Bioreactor
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Ecosystem Type |
Denitrification
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Ecosystem Subtype |
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Specific Ecosystem |
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EXPERIMENT | |
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Experimental Conditions |
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