PROJECT INFORMATION
GOLD Project ID
Gp0596676  
Project Name
Biofilm microbial communities from seawater aquarium denitrification system in Montreal, Quebec, Canada - AucOB  
Other Names
AucOB  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
Source Sample ID
PI Richard Villemur
Added By Richard Villemur on 2021-12-10
Last Modified By Richard Villemur on 2021-12-17
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Biodegradation of pollutants
Sequencing Center Genome Quebec (Canada)
Collaborating Institute
  
Funding Agency
  
Project Description
  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Biofilm microbial communities of laboratory-scale, methanol-fed denitrifying cultures
Biosample Biofilm microbial communities from seawater aquarium denitrification system in Montreal, Quebec, Canada - AucOB
Analysis Projects Biofilm microbial communities from seawater aquarium denitrification system in Montreal, Quebec, Canada - AucOB
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 4: Annotation Directed
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
rRNA-depleted RNA; RNA seq by Illumina; aligned on three genomes; unaligned were assembly de novo by Trinity; Assembled transcripts were quantified by RSEM  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Biofilm microbial communities from seawater aquarium denitrification system in Montreal, Quebec, Canada - AucOB
Other Names (alias, synonyms, short names)
AucOB  
Sample Description
Biofilm taken from a fluidized-bed, methanol-fed denitrification system treating seawater and preserved at -70C for 14 years  
SAMPLE TAXONOMY
NCBI Taxonomy ID 718308
GOLD CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Bioreactor  
Ecosystem Type
Denitrification  
Ecosystem Subtype
  
Specific Ecosystem
  
EXPERIMENT
Experimental Conditions
  

 

 

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