PROJECT INFORMATION
GOLD Project ID
Gp0573414  
Project Name
Metatranscriptome of sediment microbial communities from freshwater Prado Wetlands in Corona, California, USA - CSM_Prado_Oct18_AM_2.5z2  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject ID
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
PI Jonathan Sharp
Added By JGI automated process on 2021-07-23
Last Modified By JGI automated process on 2021-09-11
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of sediment microbial communities from freshwater Prado Wetlands in Corona, California, USA  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA
Biosample Sediment microbial communities from freshwater Prado Wetlands in Corona, California, USA - CSM_Prado_Oct18_AM_2.5z2
Analysis Projects Metatranscriptome of sediment microbial communities from freshwater Prado Wetlands in Corona, California, USA - CSM_Prado_Oct18_AM_2.5z2 (Metagenome Metatranscriptome)
Metatranscriptome of sediment microbial communities from freshwater Prado Wetlands in Corona, California, USA - CSM_Prado_Oct18_AM_2.5z2 (Metagenome Metatranscriptome Expression - Self)
Number of Analysis Projects (AP) 2
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq S4
Library Method (MIGS-28)
Illumina Low Input RNASeq w/rRNA Depletion, Tubes; Illumina Low Input RNASeq w/PolyA Selection, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Sediment microbial communities from freshwater Prado Wetlands in Corona, California, USA - CSM_Prado_Oct18_AM_2.5z2
Other Names (alias, synonyms, short names)
  
Sample Description
Sediment microbial communities from freshwater Prado Wetlands in Corona, California, USA  
SAMPLE TAXONOMY
NCBI Taxonomy ID 749907
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Wetlands  
Specific Ecosystem
Sediment  

 

 

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