PROJECT INFORMATION
GOLD Project ID
Gp0549014  
Project Name
Nannochloropsis salina CCMP1776  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Nannochloropsis salina CCMP1776
NCBI BioProject ID 503186
NCBI BioProject Accession PRJNA503186
NCBI Locus Tag
NSK  
NCBI BioSample Accession SAMN10354914
PI
Added By JGI automated process on 2021-03-12
Last Modified By JGI automated process on 2021-03-15
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Agricultural
Sequencing Center Los Alamos National Laboratory (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Nannochloropsis salina CCMP1776 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX6732041  (Link to NCBI )
Experiment Title Nannocloropsis salina CCMP1776 454 paired reads
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 454-3
Library Layout PAIRED
Library Instrument 454 GS FLX Titanium
 
SRA Experiment Id SRX6732037  (Link to NCBI )
Experiment Title Nannocloropsis salina CCMP1776 454 paired reads
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 454-2
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
 
SRA Experiment Id SRX6732039  (Link to NCBI )
Experiment Title Nannocloropsis salina CCMP1776 Illumina Raw reads
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name Illumina reads
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX6732038  (Link to NCBI )
Experiment Title Nannocloropsis salina CCMP1776 454 standard
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 454-1
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
PROJECT COMPOSITION
Study Nannochloropsis salina CCMP1776
Organism Nannochloropsis salina CCMP1776
Analysis Projects Nannochloropsis salina CCMP1776
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Draft
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina
454
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0574320
Organism Name
Nannochloropsis salina CCMP1776  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
PROTISTS-STRAMENOPILES  
Genus
Microchloropsis  
Genus Synonyms
  
Species
Microchloropsis salina  
Subspecies
  
Species Synonyms
  
Strain
CCMP1776  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2511165
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
  
NCBI Phylum
  
NCBI Class
Eustigmatophyceae  
NCBI Order
Eustigmatales  
NCBI Family
Monodopsidaceae  
NCBI Genus
Microchloropsis  
NCBI Species
Microchloropsis salina  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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