PROJECT INFORMATION
GOLD Project ID
Gp0548847  
Project Name
Lactiplantibacillus plantarum DSM 20174  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Lactiplantibacillus plantarum strain:DSMZ 20174
NCBI BioProject Accession PRJNA531377
NCBI Locus Tag
E5260  
NCBI BioSample Accession SAMN11357169
PI
Added By JGI automated process on 2021-03-12
Last Modified By Supratim Mukherjee on 2021-09-13
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Helmholtz Zentrum Munchen (Germany)
Collaborating Institute
  
Funding Agency
  
Project Description
Lactiplantibacillus plantarum DSM 20174 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications Gut microbes 2(1):25-33 Human intestinal microbiota: characterization of a simplified and stable gnotobiotic rat model.

Genome research 27(12):2083-2095 An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics.

SRA Experiment
 
SRA Experiment Id SRX5873262  (Link to NCBI )
Experiment Title Lplantarum_DSMZ20174_PacBio_SMRTcell1
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name Lplantarum_DSMZ20174_PacBio_SMRTcell1
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5873261  (Link to NCBI )
Experiment Title Lplantarum_DSMZ20174_Illumina_1
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name Lplantarum_DSMZ20174_Illumina_1
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id SRX5873260  (Link to NCBI )
Experiment Title Lplantarum_DSMZ20174_Illumina_2
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name Lplantarum_DSMZ20174_Illumina_2
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Lactobacillus plantarum DSM 20174
Organism Lactiplantibacillus plantarum DSM 20174
Analysis Projects Lactiplantibacillus plantarum DSM 20174
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio
Illumina MiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0246499
Organism Name
Lactiplantibacillus plantarum DSM 20174  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Lactiplantibacillus  
Genus Synonyms
  
Species
Lactiplantibacillus plantarum  
Subspecies
  
Species Synonyms
  
Strain
DSM 20174  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 20174  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.5420  
Exemplar Name
Lactobacillus plantarum plantarum  
Taxon DOI
10.1601/tx.10811  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1590
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Lactobacillaceae  
NCBI Genus
Lactiplantibacillus  
NCBI Species
Lactiplantibacillus plantarum  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Food production  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 14008
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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