PROJECT INFORMATION
GOLD Project ID
Gp0548692  
Project Name
Giardia muris Roberts-Thomson  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Giardia muris strain:Roberts-Thomson
NCBI BioProject ID 524057
NCBI BioProject Accession PRJNA524057
NCBI Locus Tag
GMRT  
NCBI BioSample Accession SAMN11231833
PI
Added By JGI automated process on 2021-03-12
Last Modified By JGI automated process on 2021-03-15
Project Comments
  
Project Status
Complete and Published  
Project Relevance Evolution
Sequencing Center Uppsala University (Sweden)
Collaborating Institute
  
Funding Agency
  
Project Description
Giardia muris Roberts-Thomson genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX5645851  (Link to NCBI )
Experiment Title Gmuris_cysts_dna
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name pb_124_C02_1
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5645852  (Link to NCBI )
Experiment Title Gmuris_cysts_dna
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name pb_124_B02_1
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5645853  (Link to NCBI )
Experiment Title Gmuris_cysts_dna
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name pb_124_E02_1
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5645854  (Link to NCBI )
Experiment Title Gmuris_cysts_dna
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name pb_124_D02_1
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
PROJECT COMPOSITION
Study Giardia muris Roberts-Thomson
Organism Giardia muris Roberts-Thomson
Analysis Projects Giardia muris Roberts-Thomson
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RSII
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0574018
Organism Name
Giardia muris Roberts-Thomson  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
PROTISTS-DIPLOMONADIDA  
Genus
Giardia  
Genus Synonyms
  
Species
Giardia muris  
Subspecies
  
Species Synonyms
  
Strain
Roberts-Thomson  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 5742
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
  
NCBI Phylum
Fornicata  
NCBI Class
  
NCBI Order
Diplomonadida  
NCBI Family
Hexamitidae  
NCBI Genus
Giardia  
NCBI Species
Giardia muris  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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