PROJECT INFORMATION
GOLD Project ID
Gp0546414  
Project Name
Shigella sonnei 6207  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject Accession PRJNA599490
NCBI Locus Tag
IC759  
NCBI BioSample Accession SAMN16084720
PI
Added By JGI automated process on 2021-03-12
Last Modified By JGI automated process on 2021-03-12
Project Comments
  
Project Status
Complete and Published  
Project Relevance Medical
Sequencing Center Queensland Health Forensic and Scientific Services
Collaborating Institute
  
Funding Agency
  
Project Description
Shigella sonnei 6207 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 40(2):279-286 Outbreak of multi-drug-resistant (MDR) Shigella flexneri in northern Australia due to an endemic regional clone acquiring an IncFII plasmid.

SRA Experiment
 
SRA Experiment Id SRX9292737  (Link to NCBI )
Experiment Title Shigella AMR plasmid
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name 6207GI
Library Layout SINGLE
Library Instrument GRID_ION
 
SRA Experiment Id SRX9292736  (Link to NCBI )
Experiment Title Shigella AMR plasmid
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 6207ill
Library Layout PAIRED
Library Instrument NEXT_SEQ_500
PROJECT COMPOSITION
Study Shigella flexneri WGS
Organism Shigella sonnei 6207
Analysis Projects Shigella sonnei 6207
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Oxford Nanopore GridION
Illumina NextSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0571925
Organism Name
Shigella sonnei 6207  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Shigella  
Genus Synonyms
  
Species
Shigella sonnei  
Subspecies
  
Species Synonyms
  
Strain
6207  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 624
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Shigella  
NCBI Species
Shigella sonnei  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals: Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Shigellosis
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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