PROJECT INFORMATION
GOLD Project ID
Gp0540562  
Project Name
Campylobacter sp. CFSAN093226  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Campylobacter
NCBI BioProject ID 258022
NCBI BioProject Accession PRJNA258022
NCBI Locus Tag
FBF02  
NCBI BioSample Accession SAMN11487369
PI
Added By JGI automated process on 2021-01-04
Last Modified By JGI automated process on 2021-01-05
Project Comments
  
Project Status
Complete and Published  
Project Relevance Medical
Sequencing Center FDA/CFSAN
Collaborating Institute
  
Funding Agency
  
Project Description
Genome Sequencing of Campylobacter sp. CFSAN093226  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX7531048  (Link to NCBI )
Experiment Title Draft Whole-Genome Sequences of 69 Campylobacter jejuni and 12 Campylobacter coli clinical isolates from Chile
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name CFSAN093226
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id SRX8184849  (Link to NCBI )
Experiment Title Complete Genome Sequences of 17 clinical Campylobacter jejuni strains from Chile
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name CFSAN093226
Library Layout SINGLE
Library Instrument MIN_ION
PROJECT COMPOSITION
Study Genone sequencing as part of the GenomeTrakr Project: FDA-CFSAN
Organism Campylobacter sp. CFSAN093226
Analysis Projects Campylobacter sp. CFSAN093226
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Oxford Nanopore GridION, Illumina MiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0569087
Organism Name
Campylobacter sp. CFSAN093226  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-EPSILON  
Genus
Campylobacter  
Genus Synonyms
  
Species
Campylobacter sp. CFSAN093226  
Subspecies
  
Species Synonyms
  
Strain
CFSAN093226  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2572065
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Epsilonproteobacteria  
NCBI Order
Campylobacterales  
NCBI Family
Campylobacteraceae  
NCBI Genus
Campylobacter  
NCBI Species
Campylobacter sp. CFSAN093226  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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