PROJECT INFORMATION
GOLD Project ID
Gp0539977  
Project Name
Nitratiruptor sp. EPR55-1  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Nitratiruptor sp. EPR55-1
NCBI BioProject ID 670122
NCBI BioProject Accession PRJDB9413
NCBI Locus Tag
EPR  
NCBI BioSample Accession SAMD00208313
PI
Added By JGI automated process on 2021-01-04
Last Modified By JGI automated process on 2021-01-05
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Sequencing Center Hokkaido University (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
Genome Sequencing of Nitratiruptor sp. EPR55-1  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications PloS one 15(12):e0241366 Nitrosophilus alvini gen. nov., sp. nov., a hydrogen-oxidizing chemolithoautotroph isolated from a deep-sea hydrothermal vent in the East Pacific Rise, inferred by a genome-based taxonomy of the phylum "Campylobacterota".

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Genome Sequencing of Nitratiruptor sp. EPR55-1
Organism Nitratiruptor sp. EPR55-1
Analysis Projects Nitratiruptor sp. EPR55-1
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0568502
Organism Name
Nitratiruptor sp. EPR55-1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-EPSILON  
Genus
Nitratiruptor  
Genus Synonyms
  
Species
Nitratiruptor sp. EPR55-1  
Subspecies
  
Species Synonyms
  
Strain
EPR55-1  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2714855
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Epsilonproteobacteria  
NCBI Order
Nautiliales  
NCBI Family
Nitratiruptoraceae  
NCBI Genus
Nitrosophilus  
NCBI Species
Nitrosophilus alvini  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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