Studies
|
49,622 |
|
Biosamples
|
133,253 |
|
Sequencing Projects
|
410,885 |
|
Analysis Projects
|
321,348 |
| Organisms | 410,938 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0539710
|
|
Project Name
|
Hyaloscypha bicolor P9C40 Transcriptome - P9C40_RNA
|
|
Other Names
|
|
|
Legacy GOLD ID
|
|
| NCBI BioProject Name |
|
|
NCBI BioProject ID
|
|
|
NCBI BioProject Accession
|
|
|
NCBI Locus Tag
|
|
|
NCBI BioSample Accession
|
|
| PI | Mariana Kluge |
| Added By |
JGI automated process
on 2020-12-22 |
| Last Modified By |
JGI automated process
on 2020-12-23 |
| Project Comments |
|
|
Project Status
|
incomplete
|
|
Project Relevance
|
|
|
Sequencing Center
|
DOE Joint Genome Institute (JGI)
(USA)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
U.S. Department of Energy (DOE)
(USA)
|
|
Project Description
|
Transcriptome sequencing of fungal isolate from thawing permafrost area in Abisko, Sweden to disentangle the role of fungi in the carbon cycle of aquatic environments in the Arctic and Subarctic regions
|
| Is JGI Project |
Yes
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
RNA |
|
Sequencing Strategy
|
Transcriptome
|
| EXTERNAL PROJECT LINKS | |
| JGI Portal Download | Raw Sequence Data |
|
Project Information
|
|
|
Database
|
|
|
Genome Publications
|
|
|
Other Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
The fungal contribution to the carbon cycle of Subarctic and Arctic permafrost areas |
| Organism |
Hyaloscypha bicolor P9C40 |
| Analysis Projects |
|
| Number of Analysis Projects (AP) |
0 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
In progress |
| Sequencing Quality (MIGS-31) |
|
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina NovaSeq S4 |
|
Library Method
(MIGS-28)
|
Illumina RNASeq w/PolyA Selection, Tubes
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0568411 |
| Organism Name |
Hyaloscypha bicolor P9C40
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
EUKARYAL
|
| Phylogeny |
FUNGI-ASCOMYCOTA
|
| Genus |
Hyaloscypha
|
| Genus Synonyms |
|
| Species |
Hyaloscypha bicolor
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
P9C40
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
|
| Type Strain |
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
2482752 |
| NCBI Superkingdom |
Eukaryota
|
| NCBI Kingdom |
Fungi
|
| NCBI Phylum |
Ascomycota
|
| NCBI Class |
Leotiomycetes
|
| NCBI Order |
Helotiales
|
| NCBI Family |
Hyaloscyphaceae
|
| NCBI Genus |
Hyaloscypha
|
| NCBI Species |
Hyaloscypha bicolor
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Terrestrial
|
| Ecosystem Type |
Peat
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
|
| Motility |
|
| Sporulation |
|
| Temperature Range |
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
|
| Biotic Relationships |
|
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
|
| Known Habitats |
|
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
|
You are going to add the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the SP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Checking that this Sequencing Project can be made private:
Do you want to continue with this visibility change?
Changing the SP Sequencing Strategy will also effect these items:
Do you want to continue with this Sequencing Strategy change?
