PROJECT INFORMATION
GOLD Project ID
Gp0532812  
Project Name
Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4E  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject ID
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
PI Richard Dick
Added By JGI automated process on 2020-12-04
Last Modified By JGI automated process on 2021-03-17
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Roots microbial communities from millet plant in semiarid region near Thies, Senegal; Millet roots from millet-Guiera senegalensis intercropping plot  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal
Biosample Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4E
Analysis Projects Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4E
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq S4
Library Method (MIGS-28)
Illumina Low Input Fragment, 300bp, Tubes; Illumina Regular Fragment, 300bp, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4E
Other Names (alias, synonyms, short names)
  
Sample Description
Roots microbial communities from millet plant in semiarid region near Thies, Senegal; Millet roots from millet-Guiera senegalensis intercropping plot  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1118232
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Roots  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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