PROJECT INFORMATION
GOLD Project ID
Gp0531335  
Project Name
Metatranscriptome of sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - G37 CH4_1  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Anaerobic methane-oxidizing consortia metagenomes and metatranscriptomes
NCBI BioProject ID 418316
NCBI BioProject Accession PRJNA418316
NCBI Locus Tag
  
NCBI BioSample Accession SAMN08442873
PI
Added By JGI automated process on 2020-12-01
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Max Planck Institute for Marine Microbiology
Collaborating Institute
  
Funding Agency
  
Project Description
Metatranscriptome of sediment microbial communities from Guaymas Basin, Gulf of California, Mexico  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX3639736  (Link to NCBI )
Experiment Title AOM consortia enrichment G37 CH4_1
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name G37_CH4_1_RNA_HiSeq
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Sediment microbial communities from Guaymas Basin, Gulf of California, Mexico
Biosample Sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - G37 CH4_1
Organism
Analysis Projects Metatranscriptome of sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - G37 CH4_1
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - G37 CH4_1
Other Names (alias, synonyms, short names)
  
Sample Description
Sediment microbial communities from Guaymas Basin, Gulf of California, Mexico  
SAMPLE TAXONOMY
NCBI Taxonomy ID 652676
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Hydrothermal vents  
Specific Ecosystem
  

 

 

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