PROJECT INFORMATION
GOLD Project ID
Gp0514843  
Project Name
Freshwater microbial communities from Tapajos River, Santarem, Brazil - ROCA161  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject ID
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
PI Kelly Wrighton
Added By JGI automated process on 2020-11-12
Last Modified By JGI automated process on 2020-11-13
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Freshwater microbial communities from Tapajos River, Santarem, Brazil  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Freshwater microbial communities from rivers from various locations all over the world
Biosample Freshwater microbial communities from Tapajos River, Santarem, Brazil - ROCA161
Analysis Projects Freshwater microbial communities from Tapajos River, Santarem, Brazil - ROCA161
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq S4
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates; Illumina Low Input Fragment, 300bp, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Freshwater microbial communities from Tapajos River, Santarem, Brazil - ROCA161
Other Names (alias, synonyms, short names)
  
Sample Description
Freshwater microbial communities from Tapajos River, Santarem, Brazil  
SAMPLE TAXONOMY
NCBI Taxonomy ID 449393
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
River  
Specific Ecosystem
  

 

 

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