PROJECT INFORMATION
GOLD Project ID
Gp0514523  
Project Name
Human papillomavirus 175 SE87  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject ID 485481
NCBI BioProject Accession PRJNA485481
NCBI Locus Tag
  
NCBI BioSample Accession
PI
Added By JGI automated process on 2020-11-03
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Lund University
Collaborating Institute
  
Funding Agency
  
Project Description
Human papillomavirus type 175 isolate SE87, complete genome  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid
  
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study NCBI Virus RefSeqs
Organism Human papillomavirus 175 SE87
Analysis Projects Human papillomavirus 175 SE87
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0559530
Organism Name
Human papillomavirus 175 SE87  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
VIRUS  
Phylogeny
VIRUS-COSSAVIRICOTA  
Genus
Gammapapillomavirus  
Genus Synonyms
  
Species
Gammapapillomavirus 23  
Subspecies
  
Species Synonyms
  
Strain
SE87  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1434782
NCBI Superkingdom
Viruses  
NCBI Kingdom
Shotokuvirae  
NCBI Phylum
Cossaviricota  
NCBI Class
Papovaviricetes  
NCBI Order
Zurhausenvirales  
NCBI Family
Papillomaviridae  
NCBI Genus
Gammapapillomavirus  
NCBI Species
Gammapapillomavirus 23  
Viral Group
  
Viral Subgroup
  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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