PROJECT INFORMATION
GOLD Project ID
Gp0505560  
Project Name
Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME22Jun2005-rr0822  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME22Jun2005-rr0822
NCBI BioProject Accession PRJNA709779
NCBI Locus Tag
J2104  
NCBI BioSample Accession SAMN18247710
Source Sample ID
PI Katherine McMahon
Added By JGI automated process on 2020-09-17
Last Modified By JGI automated process on 2023-12-03
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA) [ROR ID]
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA) [ROR ID]
Project Description
Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Sequencing Strategy
Metagenome  
Nucleic Acid DNA
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60001198
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX23095641  (Link to NCBI )
Experiment Title TYMEFLIES-ME22Jun2005-rr0822
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name HAHHN
Library Layout PAIRED
Library Instrument ILLUMINA_NOVA_SEQ_6000
PROJECT COMPOSITION
Study Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes
Biosample Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME22Jun2005-rr0822
Analysis Projects Lake Mendota MetaHipmer assembly
Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME22Jun2005-rr0822
Number of Analysis Projects (AP) 2
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology Illumina NovaSeq S4
Library Method
Illumina Regular Fragment, 300bp, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME22Jun2005-rr0822
Other Names (alias, synonyms, short names)
  
Sample Description
Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1647806
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Lake  
Specific Ecosystem
Epilimnion/Euphotic zone  

 

 

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