PROJECT INFORMATION
GOLD Project ID
Gp0504945  
Project Name
Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_35E_1  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject ID
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
PI Sarah Lebeis
Added By JGI automated process on 2020-08-27
Last Modified By JGI automated process on 2020-12-26
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of Arabidopsis thaliana ecotype Col-0 plant tissue grown for 7 days on vertical plate assay in growth chamber; inoculated with Pseudacidovorax sp. RU35E  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC)
Biosample Plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_35E_1
Analysis Projects Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_35E_1 (Metagenome Metatranscriptome Expression - Self)
Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_35E_1 (Metagenome Metatranscriptome)
Number of Analysis Projects (AP)
2  
Number of Derived Analyis Projects (DAP)
1  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq S4
Library Method (MIGS-28)
Illumina Low Input RNASeq w/rRNA Depletion, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_35E_1
Other Names (alias, synonyms, short names)
  
Sample Description
Arabidopsis thaliana ecotype Col-0 plant tissue grown for 7 days on vertical plate assay in growth chamber; inoculated with Pseudacidovorax sp. RU35E  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1297885
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Phyllosphere  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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