PROJECT INFORMATION
GOLD Project ID
Gp0504924  
Project Name
Metatranscriptome of seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metatranscriptome of seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10
NCBI BioProject ID 710178
NCBI BioProject Accession PRJNA710178
NCBI Locus Tag
J2369  
NCBI BioSample Accession SAMN18247927
PI Sean Crowe
Added By JGI automated process on 2020-08-27
Last Modified By JGI automated process on 2021-03-10
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of seawater microbial communities from Saanich Inlet, British Columbia, Canada  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Methane metabolizing microbial communities from different methane-rich environments from various locations
Biosample Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10
Analysis Projects Metatranscriptome of seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10 (Metagenome Metatranscriptome)
Metatranscriptome of seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10 (Metagenome Metatranscriptome Expression - Self)
Number of Analysis Projects (AP) 2
Number of Derived Analyis Projects (DAP)
1  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq S4
Library Method (MIGS-28)
Illumina Low Input RNASeq w/rRNA Depletion, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10
Other Names (alias, synonyms, short names)
  
Sample Description
Seawater microbial communities from Saanich Inlet, British Columbia, Canada  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1561972
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Inlet  
Specific Ecosystem
  

 

 

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